Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0362 ATGAAGTCCACGAATGACAATAACAGCAACGATGGAAGTAATCATACGTGGCTGGGATTCTCTCTCTCACCCCACATGAAAATGGAGACTTCTTACGGACCTCCTCATTATCACTACCATCATCAACCCCAGCCTTCTGCTGCTGTTCCCACGACCTTCTACTTGTCCCCTTCTCAGCTCACAACCACCTCTGCACCCTGTTATGTTGTTGGGGAAAACACTGCCTTTCATTCTCCGTTGTCTGCAATGCCCGTCAAGTCTGATGGCTCACTCTCTATAATGGAAGCTCTCACTCTCAGTGGATCCCAAACGCAACTTATGGGGTCGAATTCGTCTCCGAAGCTGGAGGACTATCTAGGTGGTGCAAGTATGGGTCTCAGCCTAGACGGCATCTACTATGCCCAAGCCCAAAATGCAGAGCCTCAAACCAACAGAGACCAATCTCTCCACCTTGTTTCAGAACAAGCCCACATCACCCTTCAATCCCATCCATACTGCAATGGGATTTATGAATCAGCATTGGAGCTGGAGGGAGAAATCAAGGACACCCATCTGACAGTATGCGAGGGAGGGGGGATGGAGCAGCAAATGAATGGTAGAGTAGTGTGTGAAGGGGATTTACGGTCGCTAAGCTTATCCATGAGCCCTGGTTCTCAGTCTAGCTCCGTCACGGTTCCCTCATTACCCACGCAAACTAAAAAGAGAGACTCTGCCAAGTTGGGCCACAAGCAGCCTGTCCATAGGAAATCCATTGACACTTTCGGCCAGAGAACTTCCCAGTATAGAGGCGTCACCAGACACAGATGGACCGGTAGATATGAGGCCCATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAGACCAGGAAGGGAAGACAAGGGGGATATGATATGGAAGACAAAGCTGCAAGAGCCTATGATCTGGCCGCTCTTAAGTACTGGGGACTTTCAACCCATATAAACTTTCCGTTGGAAAATTACCAAGCAGAACTTGTAGAAATGAAGAACATGAACCGGCAGGAGTACGTTGCCCACCTGAGAAGAAGAAGTAGTGGGTTTTCAAGGGGGGCTTCAATGTACAGAGGAGTAACGAGGCACCATCATCACGGAAGATGGCAAGCAAGGATAGGCAGAGTGGCAGGAAACAAGGACCTTTACCTTGGCACATTCAGCACACAAGAGGAAGCAGCGGAAGCATATGACGTAGCTGCAATCAAATTTCGTGGGGCGAATGCGGTAACTAACTTTGACATATGTAGATACGATGTTGAAAGGATCATGTGCAGCGACACCCTGCTTTCTGGGGAGTTGGCGAGACGAAACAGAGATAGCGAAGCAAGAACCGAGGCCATTGAGTACAACGCAACAAACCATAGCAATGGGGAAGCATTTGAAGTTGGAAACAAGAACGAAAATGGTTCAGAGTGGAAGATGGCTCTGTACCAGTCTGCTCAGAAACAGTCAAATGGCGGTGACCAGAAAACCATGAACAGCGGAAACTATAGAAATAGTGCATTCTCAAGGGCCCTACAAGATCTCATTGGGATTGATTCTGTTGACGACTCTACCAAAATAGGGACTCATTTTTCAAACCCATCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGCAGCCCTGGTAAAACTGTCCCCACTCTACTCTTCCCAAATCCCCCTATGCCATCCAAGATTCTTAGCCCCATTGCTAGTGGCGCCACTACTTCTTGGTTTGCTGCTACGTCTATGTCTCACTTGCCAGTCTTTGGTGCATGGAATGGTACCTAA 1788 0.4855 MKSTNDNNSNDGSNHTWLGFSLSPHMKMETSYGPPHYHYHHQPQPSAAVPTTFYLSPSQLTTTSAPCYVVGENTAFHSPLSAMPVKSDGSLSIMEALTLSGSQTQLMGSNSSPKLEDYLGGASMGLSLDGIYYAQAQNAEPQTNRDQSLHLVSEQAHITLQSHPYCNGIYESALELEGEIKDTHLTVCEGGGMEQQMNGRVVCEGDLRSLSLSMSPGSQSSSVTVPSLPTQTKKRDSAKLGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEDKAARAYDLAALKYWGLSTHINFPLENYQAELVEMKNMNRQEYVAHLRRRSSGFSRGASMYRGVTRHHHHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDICRYDVERIMCSDTLLSGELARRNRDSEARTEAIEYNATNHSNGEAFEVGNKNENGSEWKMALYQSAQKQSNGGDQKTMNSGNYRNSAFSRALQDLIGIDSVDDSTKIGTHFSNPSSLVTSLSSSREGSPGKTVPTLLFPNPPMPSKILSPIASGATTSWFAATSMSHLPVFGAWNGT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0362 595 SUPERFAMILY DNA-binding domain 259 325 IPR016177 GO:0003677
Dere04g0362 595 ProSiteProfiles AP2/ERF domain profile. 359 417 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 CDD AP2 358 418 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 SMART rav1_2 260 329 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 SMART rav1_2 359 423 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 MobiDBLite consensus disorder prediction 213 234 - -
Dere04g0362 595 FunFam AP2-like ethylene-responsive transcription factor ANT 259 325 - -
Dere04g0362 595 MobiDBLite consensus disorder prediction 530 548 - -
Dere04g0362 595 CDD AP2 259 323 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 488 - -
Dere04g0362 595 MobiDBLite consensus disorder prediction 213 247 - -
Dere04g0362 595 MobiDBLite consensus disorder prediction 530 549 - -
Dere04g0362 595 Gene3D AP2/ERF domain 259 325 IPR036955 GO:0003700|GO:0006355
Dere04g0362 595 Gene3D AP2/ERF domain 359 419 IPR036955 GO:0003700|GO:0006355
Dere04g0362 595 PRINTS Ethylene responsive element binding protein signature 399 419 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 SUPERFAMILY DNA-binding domain 358 417 IPR016177 GO:0003677
Dere04g0362 595 Pfam AP2 domain 360 409 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 ProSiteProfiles AP2/ERF domain profile. 260 323 IPR001471 GO:0003700|GO:0006355
Dere04g0362 595 FunFam AP2-like ethylene-responsive transcription factor 358 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0362 Dere-ChrDere04 3712727 3715541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0362 1 444 AP2-EREBP Transcription Factor Family AT4G37750 52.314 2.92e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere04g0362 AP2 3.3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1734 05 27066739 27069929 Dere04g0362 04 3712727 3715541 CCT
Dere04g0362 04 3712727 3715541 Dere04g0362 04 3712727 3715541 ECH