LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0358	ATGCTGTTCCAAGAAGAAGAAGCGCCCCAGTTCCCATGTCCAGTTCTCGAAACTGTACTCACAGCAGGGGAGATACAGGAGTTGTTGGCCCTCATCCAATCAGGAGACGGAGATGCGGTCAGCCCAAGCTCCGGTTCGCAAGGGTCGAGCCGGGAGGTTTACTGGATGGATGAGAGAAAGCGCCGGCGGATGCAATCGAACAGGGAGTCGGCCCGGCGGTCCCGCTGGAGAAAGAAGAGGCATTTAGAGAACCTGACCAACCAAGTGAACCGGTTCTCCATTGAAAACCGACAACTCAAGAACCGGCTAGCCTTCGCCATGCATCAATTCCGTCTCGTGTGCTTAGAGAATGAACGGCTGAGATCGGAATCTGTGGCCCTCCTGGCCAGACTTTCGGATCTATATTTGATTTTAGGCTCCATGCATTCCCAATAG	435	0.5379	MLFQEEEAPQFPCPVLETVLTAGEIQELLALIQSGDGDAVSPSSGSQGSSREVYWMDERKRRRMQSNRESARRSRWRKKRHLENLTNQVNRFSIENRQLKNRLAFAMHQFRLVCLENERLRSESVALLARLSDLYLILGSMHSQ	144

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0358	144	PANTHER	BZIP TRANSCRIPTION FACTOR 44	43	141	-	-
	Dere04g0358	144	MobiDBLite	consensus disorder prediction	36	76	-	-
	Dere04g0358	144	MobiDBLite	consensus disorder prediction	37	51	-	-
	Dere04g0358	144	MobiDBLite	consensus disorder prediction	53	71	-	-
	Dere04g0358	144	CDD	bZIP_plant_GBF1	60	111	IPR045314	GO:0003700\|GO:0006355
	Dere04g0358	144	Pfam	bZIP transcription factor	59	103	IPR004827	GO:0003700\|GO:0006355
	Dere04g0358	144	SUPERFAMILY	Leucine zipper domain	59	109	IPR046347	GO:0003700\|GO:0006355
	Dere04g0358	144	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	62	77	IPR004827	GO:0003700\|GO:0006355
	Dere04g0358	144	FunFam	BZIP transcription factor	57	108	-	-
	Dere04g0358	144	Coils	Coil	82	102	-	-
	Dere04g0358	144	Gene3D	-	57	135	-	-
	Dere04g0358	144	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	57	104	IPR004827	GO:0003700\|GO:0006355
	Dere04g0358	144	SMART	brlzneu	55	119	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0358	Dere-ChrDere04	3666396	3666830	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g0358	17	143	bZIP Transcription Factor Family	AT1G59530	44.882	1.09e-21	83.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere04g0358		bZIP_1	1.2e-09	CL0018