Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0356 ATGACTCTGTATCGGCCATCTGCTGGTAGTGGCCTTGAGGTGCTCGATCTGGAAACAGCTGTAAAAGGTGGGGTTTTGGATGGCCAAGCTGCTTTAACCGGTGGCGGTTGCGGCGGCGTTGACAAAATAGATCTGACGGTGTTGATTGAGGAGCTGGAGTCATTTGATGTACCCTCGGTGTTCATCTGTCCAATCTCGTTAGAGCCAATGCGAGAGCCCGTGACCCTTTGCACCGGTCAGACCTATGACAGATCCAACATTCTCAAATGGCTCGCTCTGGGTCACAATACATGCCCCACAACGATGCAGGAGCTTTGGGACGATTCAGTGACGCTGAACAGGACTCTCAACCAATTAATTCATGGCTGGTTCTTGCAGAAGTACCTTTCCATGAAGAAGCAGTACCAGGATGTGCAAGGAAGAGCTTTGGAGCTCTTGAAAACGCTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCTCTTCAAGATCTTAGGCAGATTGTCACTGCCCATGCGTCCACAAGGATGACAGTTACAGAAAACGGTGGGCTAGCTTTACTTTCTTCTTTATTGGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCAATTGGAATTCTTGTGAATTTAGATCTGTGTTCAGAGTCGAAGAAAAATCTGATGCACCCGTCGAGGATATCTTTGCTGGTTGACATCATGAATGAGGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGCTCGAAACGTTGTTGAAGGAAGTGAACGAGTCGGAGACGGAGATTGTGTCCAGTTTGAGTCTTTTGGTTGGATTATTGAGGTTGGCGAGGGATAAGAAACACCCAAATGGGGCCTTAACTGGACTCGTATTACTGAAGACTATATGTTCCCACGAATCGGTCAGAAGCTCCATGGTAAGCATAGGAGCAGTTGGTCAGTTGATTGAGCTTCTACCCAGTTTAAACAACGAGTGCTTAGAGATAGCCCTGTGTATTCTAGAGGTATTGTCAACTCTTCCAGAGGGAAGATTGGCTTTGAAAGAGTGCCCAAACATCATACCGAACGTGGTGAAGTTAATGATGAGAGTATCAGAGAGTAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCTTCACAGGCTGTGGAGGCCGGGTTGGCAGCAAAGTTGCTGCTTGTAATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGATGTCTACTGAGTTCTTAAAAATGTGCAGTCTCAATTACTCCACCAATCTTTTGATTTCAAAGTGTATGCTCACCAAAACAATACAATGA 1329 0.4658 MTLYRPSAGSGLEVLDLETAVKGGVLDGQAALTGGGCGGVDKIDLTVLIEELESFDVPSVFICPISLEPMREPVTLCTGQTYDRSNILKWLALGHNTCPTTMQELWDDSVTLNRTLNQLIHGWFLQKYLSMKKQYQDVQGRALELLKTLKKVKGQARVQALQDLRQIVTAHASTRMTVTENGGLALLSSLLGPFTSHAVGSEAIGILVNLDLCSESKKNLMHPSRISLLVDIMNEGTIETKMNCAKLLETLLKEVNESETEIVSSLSLLVGLLRLARDKKHPNGALTGLVLLKTICSHESVRSSMVSIGAVGQLIELLPSLNNECLEIALCILEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTNLLISKCMLTKTIQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0356 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Dere04g0356 442 PANTHER WDSAM1 PROTEIN 50 428 IPR045185 GO:0061630
Dere04g0356 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 128 IPR013083 -
Dere04g0356 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Dere04g0356 442 Gene3D - 129 436 IPR011989 -
Dere04g0356 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Dere04g0356 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Dere04g0356 442 SUPERFAMILY ARM repeat 134 425 IPR016024 -
Dere04g0356 442 SUPERFAMILY RING/U-box 51 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0356 Dere-ChrDere04 3649050 3650378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0356 1 442 U-box Gene Family AT5G65920 58.186 0.0 521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0356 04 3649050 3650378 Dere04g0356 04 3649050 3650378 ECH