LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0342	ATGGTATCAACAACCGCTCAGCATTGCATTGCAGGGCAACCGGATGACATGTGCAAGTGCTACTCTATGAAAGGCGAGATTCGAGAAAGAGAGCATGCCAGCTGCGACCTGGTTGATCAAGTGTTGACAGTTGCTATTTGGAATCATGGGACCCCACTTCGACAAAGTCTGCTTTGGCCTTTTGGTCTCCGCAATTTCCTGCATCTCACAATTCTCTCCCCTTTGCCTTATCCCCTCTCCTTTGGTCTGTTCCATCTTCCCTGTAGAAAATCAAAGACAAAACACACATATAATCTGCTTCTAACTTTGCAAGGTGAGAGAAAATTAAGTATGGCATTTGCAGGAACAACCCAAAAGTGCATGGCTTGTGAGAAAACAGTCTATTTGGTTGATAAGTTAACTGCGGATAACCGAGTGTACCACAAAGCTTGCTTCAGATGCCACCACTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCTTTCGAGGGAGTTCTATACTGCAAGCCCCACTTCGACCAATTGTTCAAAAGAACCGGTAGCCTTGACAAAAGCTTCGAAGGGACGCCAAAAATTGCTAAACCAGAGAAAACCATTGATAATGAGAAACCTGCAGCAACCAAAGTGTCAAGCATGTTTGGTGGAACCAGGGATAGATGTACTGGTTGTCAGAAAACAGTCTATCCAACTGAGAAGGTTACTGTGAATGGAACTCCGTACCACAAGAGTTGTTTCAAATGTTGCCACGGAGGATGTGTTATAAGTCCCTCCAACTACATTGCTCATGAGAGCAGACTCTACTGCAAACACCACCATGTCCAGCTGATCAAGGAGAAGGGCAATTTGAGCCAGCTTGAAGGTGATCATGACAAGAGTGCCGTGCATGATAAAATCGGCGCCGAACAAGTTGTTGCTCACACATAG	924	0.4502	MVSTTAQHCIAGQPDDMCKCYSMKGEIREREHASCDLVDQVLTVAIWNHGTPLRQSLLWPFGLRNFLHLTILSPLPYPLSFGLFHLPCRKSKTKHTYNLLLTLQGERKLSMAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTIDNEKPAATKVSSMFGGTRDRCTGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHESRLYCKHHHVQLIKEKGNLSQLEGDHDKSAVHDKIGAEQVVAHT	307

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0342	307	CDD	LIM2_SF3	220	280	-	-
	Dere04g0342	307	ProSitePatterns	LIM zinc-binding domain signature.	120	154	IPR001781	-
	Dere04g0342	307	PANTHER	OS06G0237300 PROTEIN	97	203	-	-
	Dere04g0342	307	CDD	LIM1_SF3	116	178	-	-
	Dere04g0342	307	ProSiteProfiles	LIM domain profile.	218	278	IPR001781	-
	Dere04g0342	307	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	246	285	-	-
	Dere04g0342	307	Pfam	LIM domain	220	274	IPR001781	-
	Dere04g0342	307	Pfam	LIM domain	120	174	IPR001781	-
	Dere04g0342	307	FunFam	LIM domain and actin-binding 1	214	284	-	-
	Dere04g0342	307	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	146	186	-	-
	Dere04g0342	307	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	212	245	-	-
	Dere04g0342	307	ProSiteProfiles	LIM domain profile.	118	178	IPR001781	-
	Dere04g0342	307	Gene3D	Cysteine Rich Protein	114	184	-	-
	Dere04g0342	307	Gene3D	Cysteine Rich Protein	215	284	-	-
	Dere04g0342	307	FunFam	LIM domain and actin-binding 1	114	184	-	-
	Dere04g0342	307	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	113	145	-	-
	Dere04g0342	307	SMART	lim_4	219	271	IPR001781	-
	Dere04g0342	307	SMART	lim_4	119	171	IPR001781	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0342	Dere-ChrDere04	3369225	3371541	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Dere04g0342		LIM	4.6e-11	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g1708	05	26770051	26771653	Dere04g0342	04	3369225	3371541	CCT
	Dere04g0342	04	3369225	3371541	Dere04g0342	04	3369225	3371541	ECH