Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0330 ATGGGGACGGAGAGTCCAGCTAATTTCACCTATATGGGACGCAGTATCAGCCAATTGAGTATCAATGATGATTCCTCCTCTGCTTTCAGCGACTGTAACAGTGACAGATCTGGTGAATTCCCTACAGCTTCTTCCCAAAGCCGCCGTCTTCTTATTGCCTGCGCTTCTGAGAATTCCGATGATCTTATTCGTCAGCTTGTCTCCGATCTCCACTCCTGTTCCATAGATGAACAAAAGCAAGCCGCCTTGGAGATCAGATTACTCGCCAAGAACAAATCAGAAAATCGCCTCAAAATCGCCAGAGCCGGCGCAATTAAGCCCTTAATCTCGCTTATATCTTCCCCTGACACTCAGCTGCAAGAGTACGGCGTCACAGCGATTCTGAATCTTTCCCTATGCGATGAGAACAAAGAGCTTATAGCTTTATCCGGAGCGATTAAGCCGCTGGTTCGAGCTCTCAAAACAGGGACATCGACGGCTAAAGAGAACGCAGCATGCGCTTTACTTCGTTTGTCGCAAATAGATGAGAACAAGATCGCAATTGGAAGGTCAGGAGCCATTCCGCTGCTAGTGAATCTTCTAGAGAACGGGGGTTTCCGAGGGAAGAAAGACGCGTCGACGGCGCTTTACTCGCTATGTTCGGTGAAGGAGAACAAAATAAGAGCAGTAAAAGCAGGAATCATGAAGGCATTAGTGGAATTGATGTCTGATTTTGGATCAAATATGGTGGACAAGTCAGCATACGTGTTGAGCGTGCTGGTATCGGTACCGGAGGCGAGGACGGCGTTAGTGGAGGAAGAAGGGATTCCTGTGCTGGTGGAGTTGATAGAGGCGGGATCACAGAGACAGAAGGAAATCGCGGTGGTAATATTGTTGCAGATTTGCGAGGACAGCACGGCTTATCGTACTATGGTTGCTCGTGAAGGAGCCATTCCTCCCTTGGTCGCATTGTCCCAGTCCGGCACCAATCGCGCCAAACAAAAGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCGGCAACGCCGCTGCCCGCACCTCAGAAGTGTCGGCATAA 1062 0.4962 MGTESPANFTYMGRSISQLSINDDSSSAFSDCNSDRSGEFPTASSQSRRLLIACASENSDDLIRQLVSDLHSCSIDEQKQAALEIRLLAKNKSENRLKIARAGAIKPLISLISSPDTQLQEYGVTAILNLSLCDENKELIALSGAIKPLVRALKTGTSTAKENAACALLRLSQIDENKIAIGRSGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMKALVELMSDFGSNMVDKSAYVLSVLVSVPEARTALVEEEGIPVLVELIEAGSQRQKEIAVVILLQICEDSTAYRTMVAREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSGNAAARTSEVSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0330 353 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Dere04g0330 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Dere04g0330 353 Pfam Armadillo/beta-catenin-like repeat 175 214 IPR000225 GO:0005515
Dere04g0330 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Dere04g0330 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 92 132 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 133 173 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 174 214 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 298 338 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 256 296 IPR000225 GO:0005515
Dere04g0330 353 SMART arm_5 215 255 IPR000225 GO:0005515
Dere04g0330 353 FunFam RING-type E3 ubiquitin transferase 52 342 - -
Dere04g0330 353 Gene3D - 22 198 IPR011989 -
Dere04g0330 353 Gene3D - 200 351 IPR011989 -
Dere04g0330 353 SUPERFAMILY ARM repeat 59 336 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0330 Dere-ChrDere04 3287450 3289097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0330 27 345 U-box Gene Family AT2G23140 48.328 2.87e-88 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1696 05 26689723 26691700 Dere04g0330 04 3287450 3289097 CCT