Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0324 ATGGCTCTGGAAGCTATGAAATCATCCACCACCCCCACCGCATCCTTCCCCTTCCAACCTTCCGACCTCAACAACCTCGAGCCATGCCCATGGGCCAAGCGAAAGCGTTCCAAGCGTAACCGCCTCGATCACCCTTCCTGCACCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCTCCACCAATTCCACCGCCTCACACCGCCACGCCGCCCCTCCCCCTTTTGTGTCTGACTCCGTGCCTCTGTCCTCTACAGATCCCGCCACTACTTCCAAGTTCACTTACAAGTGCTCCGTTTGCAACAGAGCCTTCTCCTCTTACCAAGCTCTTGGCGGCCACAAGGCTAGTCATCGAAAACTAGCCGGGGAAGATCAGAATACTTCTTCCAACGTCACCAGTACTGCTTCTGCCAACACCGCCACCACTGCATCTAACGGTGGGGGTAGGCTTCACGAGTGTTCTATCTGCCATAAGTCCTTCCCCACAGGACAGGCCTTGGGCGGACACAAACGTTGTCACTACGAGGGCGGCGCAAGCAGTGTCACAGCCTCCGAAGGTGTGGGGTCCACCCATACCGTCAGCCACGCCCACCGTGATTTCGATCTCAACATCCCTGCTTTCTCCGTGACGGCGGACGAGGAGGTCGAGAGCCCTCTCCCACTGAAGAAGCCCCGCCTTCCGATGGCACCCAACGTCGAAATCCCCCAACGCCAGTGA 729 0.583 MALEAMKSSTTPTASFPFQPSDLNNLEPCPWAKRKRSKRNRLDHPSCTEEEYLALCLIMLARGSTNSTASHRHAAPPPFVSDSVPLSSTDPATTSKFTYKCSVCNRAFSSYQALGGHKASHRKLAGEDQNTSSNVTSTASANTATTASNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGASSVTASEGVGSTHTVSHAHRDFDLNIPAFSVTADEEVESPLPLKKPRLPMAPNVEIPQRQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0324 242 SUPERFAMILY beta-beta-alpha zinc fingers 98 177 IPR036236 -
Dere04g0324 242 Gene3D Classic Zinc Finger 97 177 - -
Dere04g0324 242 MobiDBLite consensus disorder prediction 126 148 - -
Dere04g0324 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 177 IPR013087 -
Dere04g0324 242 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 210 IPR044653 GO:0003700
Dere04g0324 242 MobiDBLite consensus disorder prediction 121 148 - -
Dere04g0324 242 MobiDBLite consensus disorder prediction 219 242 - -
Dere04g0324 242 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g0324 242 SMART c2h2final6 99 121 IPR013087 -
Dere04g0324 242 SMART c2h2final6 155 177 IPR013087 -
Dere04g0324 242 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Dere04g0324 242 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Dere04g0324 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Dere04g0324 242 Pfam C2H2-type zinc finger 99 123 - -
Dere04g0324 242 Pfam C2H2-type zinc finger 155 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0324 Dere-ChrDere04 3240468 3241196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0324 1 238 C2H2 Transcription Factor Family AT1G27730 48.221 5.00e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0324 zf-C2H2_6 1.8e-12 CL0361