Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0309 ATGAGTGCTCAGTCGCCAGAAGACGATAGAAACCAAGAAGTGAGCCGGCTACTGCAGCCCCAGAATGAGTCACAACCATCTTCATTGGACGATCAGGAGGTCGCATATGAAGCAGGGGAGAAGATCCTTGTATTCGATTTGGACTCCAATGATGAGGATTCAGCGACGGTGCCGTCTTTCTCGTGGAAGAAACTATGGCTATTCACTGGTCCTGGATTCTTAATGAGCATAGCTTTTCTGGATCCGGGAAATCTCGAAGGAGATCTCCAGGCTGGAGCCATCGCCGGCTACTCCTTGCTCTGGCTACTGATGTGGGCCACTATTATGGGCTTGTTGATACAGCTTCTATCCGCAAGGATTGGGGTGGCGACGGGTCGGGACCTGGCGGAGCTGTGCCGGGAGGAATATCCAAATTGGGCTGGGTTCGTGCTCTGGTTCATGGCGGAGATTGCCTTGATTGGTGCTGACATTCAGGAGGTCATTGGGAGTGCAATCGCTATCCAAATTCTTAGCCACGGGGTGTTGCCGCTCTGGGCTGGAGTCTTAATTACTGCTTCCGACTGTTTCATCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCAACTATGGCTCTTTCTTTTGCCTGGATGTTTGCTGACACTAAACCCAGTGGACAAGAACTTTTGATGGGTATTTTGGTTCCAAGACTTAGCTCAAAGACAATTCGCCAGGCTGTGGGGGTTGTGGGTTGCGTCATAATGCCTCACAATGTATTCCTTCATTCTGCTTTGGTTCAATCAAGGAAGATAGATCCCCAGAAGAAAGGCCGAGTGCAGGAGGCCCTCAACTACTATTCAATTGAGTCATCGGCTGCACTTCTAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGCTTTTACGGTACAAAGCAGGCCAACAGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAAAAGTATGGAGGAGGACTCTTCCCCATTCTTTATATATGGGGTATTGGGTTATTGGCTGCTGGACAGAGTAGTACAATCACTGGCACTTATGCTGGGCAATTCATAATGGGGGGCTTTCTCAATCTTCGTTTAAAGAAATGGTTGAGGGCATTGATCACTAGAAGTTTTGCAATTGTGCCAACCATAGTTGTAGCTATTGTTTTTAATACTTCGGAAGCGTCATTGGACATTTTAAATGAATGGCTTAATGTGCTTCAGTCTATGCAAATTCCTTTTGCACTAATACCTCTCCTCACCTTGGTCTCCAAAGAGGAGGTCATGGGGATCTTTAGGGTTGGGCCTGTTCTTGAGAGGGTGGCATGGACAGTTGCTGTGCTGATAATAGTGATTAATGGGTATCTTTTGTTTGATTTCTTTGTTTCTGAGGTGAACGGCGTGCTGCTTGGTTTGGCAGTCTGCTCATGTACAGCTGCATATGTGTTATTCATTGTATATTTGGTTTCACGGAGCGGTGCTCTTCCTTCCACTTGGGTTAATATACTTTCCAAGGGATTTGCTTTTACTGAGAATTAA 1575 0.4622 MSAQSPEDDRNQEVSRLLQPQNESQPSSLDDQEVAYEAGEKILVFDLDSNDEDSATVPSFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATIMGLLIQLLSARIGVATGRDLAELCREEYPNWAGFVLWFMAEIALIGADIQEVIGSAIAIQILSHGVLPLWAGVLITASDCFIFLFLENYGVRKLEAAFAVLIATMALSFAWMFADTKPSGQELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKKGRVQEALNYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIVVAIVFNTSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEEVMGIFRVGPVLERVAWTVAVLIIVINGYLLFDFFVSEVNGVLLGLAVCSCTAAYVLFIVYLVSRSGALPSTWVNILSKGFAFTEN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 199 220 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 417 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 144 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 355 374 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 383 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 174 193 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PRINTS Natural resistance-associated macrophage protein signature 248 271 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 NCBIfam Nramp family divalent metal transporter 70 439 - -
Dere04g0309 524 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 63 441 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 50 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 MobiDBLite consensus disorder prediction 15 31 - -
Dere04g0309 524 Pfam Natural resistance-associated macrophage protein 86 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere04g0309 524 MobiDBLite consensus disorder prediction 1 32 - -
Dere04g0309 524 Hamap Divalent metal cation transporter MntH [mntH]. 50 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0309 Dere-ChrDere04 3093914 3098157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0309 31 504 Inorganic Solute Cotransporters AT1G47240 81.933 0.0 806