Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0308 ATGGGAAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACGCAACGAATAGACAGGTCACCTTCTCGAAGAGGAGGAATGGACTCATCAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGACATTGATGTGGCTCTAATCATGTTTTCCCCTTCTGGGAGGGCAAGTCTCTTTTCTGGGGGCAGAAGCATTGAAGAAATTCTTGAACGATACATTAATCTTCCCGAGCACGAACGTGAAAGCCCGATGACTACAGACTTCCAGCTTGAGCGAGTTCTTGAGGAGGAGTGTATTTCTCATGCAGCTGCTCCAGCTCCGCAGGTGCATCTTGCCAAACCCGTAGATGTAGATGGATTTGGTCGTGGAAGCACAAAGAACTTTGTGGAGTGGCTTCCACACGGAAATCCCCAGGTTCAGATCCAGAACTTTGTCGATGCCAGTGGTTTTCTTCCTCTCGGAGATCAACAATCACACAGTACAGTGGTTGATTTGTTAACGCCAACTTCAACACTGGTTCGTGCCCACAGTCACTTGAGTCCCAGAGAGGCTTTAAACCAGGATGATTTCGGACAATTTATTGACATCAATTCCTTCCCTTGGGGACAACTCCAACCTCCAGGAAGTGAATCATTGGCAAGGACGAGGGAAGGACAACTACTTGAACTGTACTTTTCTCATTTGAACCCATCAAACATCTTAATACCCCTTCACCATCAGCCTCAAACATGA 726 0.4614 MGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDIDVALIMFSPSGRASLFSGGRSIEEILERYINLPEHERESPMTTDFQLERVLEEECISHAAAPAPQVHLAKPVDVDGFGRGSTKNFVEWLPHGNPQVQIQNFVDASGFLPLGDQQSHSTVVDLLTPTSTLVRAHSHLSPREALNQDDFGQFIDINSFPWGQLQPPGSESLARTREGQLLELYFSHLNPSNILIPLHHQPQT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0308 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere04g0308 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere04g0308 241 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dere04g0308 241 PANTHER MADS BOX PROTEIN 3 84 - -
Dere04g0308 241 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Dere04g0308 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Dere04g0308 241 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Dere04g0308 241 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Dere04g0308 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g0308 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g0308 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0308 Dere-ChrDere04 3084617 3087038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0308 1 97 Type I MADS-box Gene Family AT1G22130 67.677 2.34e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g0308 SRF-TF 4e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0308 04 3084617 3087038 Dere04g0308 04 3084617 3087038 ECH