Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0307 ATGGAGACTCGCGCAGCAAAGAGGAGGGCGGAGGCCGCCGGCTTAGTCCAGAACCAATCTCCCAAGAGGAAACGGGTGGTGCTGGCTGAACTTCCCAATTTGTCGAACCTTATTGATCCTGTAACTTCGAATCCGGGGTTGGAGCCACAGAAGCCGAAATACCGAAGGAATACGAGGGTCAAGAAGGTTGTGGCCACGAAGGATAGCCTCTCTTTGGGGGATCCCAAATTCGAAGATAAGAAGATCGAGGTAAAGAAGGCAGTTGAGATTGATGCAAAGTCAGGCACTGATGCAAATTTGGATGATTTGCATAATAGCGAGTCTTATGTTTCAGACATTTATCATTATCTGCGCAAAATGGAGATGGAGCCAAGGAGAAGACCGGTTCCTGACTACCTCGAGAAAGTTCAGAAAGATATTACCGCCAACATGAGAGGAATATTGGTTGACTGGTTAGTGGAGGTTGCAGAGGAGTACAAGCTACTCTCTGACACTCTTTACCTCTCTGTTTCCTACATTGATCGCTTCCTCTCCGCCAACCGAGTCACTAGGCAGAGACTTCAGTTGCTGGGTGTTTCATCCATGTTCATTGCATCGAAGTATGAAGAAATTAGCCCTCCGCATGTGGAAGAGTTTTGCTACATCACCGATAATACATACAGAAAGGCGGAGGTCGTAGAAATGGAGGCTGCTATACTCAAATCCCTAAATTTTGAAATGGGTAATCCTACCGTAAAGACTTTTCTGAGGAGGTTTTCTGGTATTACTTCTGGAAATCAGAAAACTCCAAATCTGCAGTTTGAGTTTCTTTGCTGCTATCTTGCCGAGCTAAGTTTGTTGGATTATAATTGTATTAAGTTCTCACCTTCTTTGGTGGCTGCTTCAGTTGTATTTCTTGCCAGATTTATCATCTGGCCGAAGGTGCATCCCTGGCATTCCGCCCTGCAAGAATGCTCGGGATATAAATCAGTTGAGTTGAAAGAATGTGTGCTTATCTTGCTCGACTTGTATTTGGCAAGAAAAGGAGGGTCTTTGCAAGCTATACGGGAGAAATACAAACAGCACAAGTTCAAATATGTGGCAATGCTGCCTTCTCCTCCGGAGATCTCAAATTCTTACTTCGAAGAAGAGTAG 1134 0.4497 METRAAKRRAEAAGLVQNQSPKRKRVVLAELPNLSNLIDPVTSNPGLEPQKPKYRRNTRVKKVVATKDSLSLGDPKFEDKKIEVKKAVEIDAKSGTDANLDDLHNSESYVSDIYHYLRKMEMEPRRRPVPDYLEKVQKDITANMRGILVDWLVEVAEEYKLLSDTLYLSVSYIDRFLSANRVTRQRLQLLGVSSMFIASKYEEISPPHVEEFCYITDNTYRKAEVVEMEAAILKSLNFEMGNPTVKTFLRRFSGITSGNQKTPNLQFEFLCCYLAELSLLDYNCIKFSPSLVAASVVFLARFIIWPKVHPWHSALQECSGYKSVELKECVLILLDLYLARKGGSLQAIREKYKQHKFKYVAMLPSPPEISNSYFEEE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0307 377 FunFam Mitotic cyclin 6 128 228 - -
Dere04g0307 377 Pfam Cyclin, N-terminal domain 112 240 IPR006671 -
Dere04g0307 377 SMART Cyclin_C_2 243 366 IPR004367 -
Dere04g0307 377 ProSitePatterns Cyclins signature. 145 176 IPR006671 -
Dere04g0307 377 Pfam Cyclin, C-terminal domain 243 365 IPR004367 -
Dere04g0307 377 Gene3D - 112 362 - -
Dere04g0307 377 FunFam Cyclin A1 230 362 - -
Dere04g0307 377 SUPERFAMILY Cyclin-like 243 367 IPR036915 -
Dere04g0307 377 SUPERFAMILY Cyclin-like 102 240 IPR036915 -
Dere04g0307 377 PANTHER CYCLINS 86 354 IPR039361 -
Dere04g0307 377 PIRSF Cyclin_A_B_D_E 2 376 IPR046965 GO:0016538|GO:0044772
Dere04g0307 377 MobiDBLite consensus disorder prediction 1 23 - -
Dere04g0307 377 Gene3D - 128 241 - -
Dere04g0307 377 SMART cyclin_7 150 234 IPR013763 -
Dere04g0307 377 SMART cyclin_7 247 335 IPR013763 -
Dere04g0307 377 CDD CYCLIN_AtCycA-like_rpt2 243 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0307 Dere-ChrDere04 3072022 3074080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0307 5 376 Core Cell Cycle Gene Families AT1G47210 54.032 1.59e-140 402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0307 04 3072022 3074080 Dere04g0307 04 3072022 3074080 ECH