Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0306 ATGGCTGACCAAGAGAATTGTGTGGGGGTCACCCGGGCAGCCAAGAAGAGGGCTGCCCCCGCCATTGCTGAACAGCAGGCTGCCACTAAGAAGCGCGTGGTGTTGGGAGAGCTCACCAATTTGTCAAATGTTGGCGTGCCGGAGAAACCATGTTCCAGGGAGGAGATTCGAAGGGAGAAAAGTAGTAGAATCATAAGAAAAGTCACAAAAGTTCCATCCACGACTATGGCCACACCGTCCCACCTCAATGATGCAGATAAAAAGTTGGATGATCCCCAGATGGCCGGGCCTTATGTTTCTGATATTTACAACTATCTCCGAAGTTTGGAGGTAGATCCCCGAAGAAGACCGTTACCTGATTACATAAAAAAAGTTCAGAGAGATGTTACTCCTAACATGAGGGGCGCTTTGGTAGATTGGTTGGTGGAAGTTGCAGAAGAATACAAGCTTGTTTCAGACACTCTTTATCTTACTGTTGCTTATATCGATAGGTTTCTATCTTTAAATGCTCTCAAGAAGCAGAGGCTGCAGTTACTGGGTGTTTCGTCGATGCTAATTGCCTCAAAGTACGAGGAGATCAAGCCTCATGACGTGGAAGATTTTTGTTACATTACAGACAACACATACAAGAAGGAAGAGGTTGTGGAGATGGAAGCTGAAATACTAAAGTCATTGAAATTTGAACTGGGCTACCCTACAATTTCTAATCTCCAGTTTGAGTTCCTTACCTCTTACCTTGCGGAGCTCAGTCTGTTAGATTATTGTTGTGTGAAGTTCTTGCCTTCTATGGTGGCCGCCTCCGTTATATTTCTAGCCAGATATATGCTAAGCCCAAAGATTCATCCTTGGAATTCCACGCTCCATCAACTCTCTGGGTATAGATCATCTGACTTGAAGGAATGTGTACTCCTCATTCATGACTTGTTTCTAAGTAGGAGAGGTGGATCTTTGCAGACTGTAAGAGAGAAATATAAACAGCATAAGTTTAAGTGTGTTGCAACAACGCCTTCTCCTCCAGAGGTACCTCTTTCTTATTTCGATGTTAGAGATTAG 1053 0.4406 MADQENCVGVTRAAKKRAAPAIAEQQAATKKRVVLGELTNLSNVGVPEKPCSREEIRREKSSRIIRKVTKVPSTTMATPSHLNDADKKLDDPQMAGPYVSDIYNYLRSLEVDPRRRPLPDYIKKVQRDVTPNMRGALVDWLVEVAEEYKLVSDTLYLTVAYIDRFLSLNALKKQRLQLLGVSSMLIASKYEEIKPHDVEDFCYITDNTYKKEEVVEMEAEILKSLKFELGYPTISNLQFEFLTSYLAELSLLDYCCVKFLPSMVAASVIFLARYMLSPKIHPWNSTLHQLSGYRSSDLKECVLLIHDLFLSRRGGSLQTVREKYKQHKFKCVATTPSPPEVPLSYFDVRD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0306 350 Pfam Cyclin, C-terminal domain 236 337 IPR004367 -
Dere04g0306 350 ProSitePatterns Cyclins signature. 134 165 IPR006671 -
Dere04g0306 350 Gene3D - 117 230 - -
Dere04g0306 350 Gene3D - 101 334 - -
Dere04g0306 350 FunFam Cyclin A1 219 334 - -
Dere04g0306 350 Pfam Cyclin, N-terminal domain 101 229 IPR006671 -
Dere04g0306 350 SUPERFAMILY Cyclin-like 236 339 IPR036915 -
Dere04g0306 350 SMART Cyclin_C_2 156 338 IPR004367 -
Dere04g0306 350 SMART cyclin_7 139 223 IPR013763 -
Dere04g0306 350 SMART cyclin_7 224 307 IPR013763 -
Dere04g0306 350 FunFam Mitotic cyclin 6 117 217 - -
Dere04g0306 350 PIRSF Cyclin_A_B_D_E 2 344 IPR046965 GO:0016538|GO:0044772
Dere04g0306 350 PANTHER CYCLINS 78 332 IPR039361 -
Dere04g0306 350 SUPERFAMILY Cyclin-like 90 229 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0306 Dere-ChrDere04 3065518 3067814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0306 1 347 Core Cell Cycle Gene Families AT5G43080 58.402 7.25e-146 414