Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0278 ATGAATACTCTCTCACTCTCCTACGCAATAGAACCAATCCCTTCTTCACTTTTCCTTTGCAATCGCAGGTCACAGAGTAGCCTCCATTTCTGGCCGTCTCCCTTCCCCAGTTTCAGAAACACAGTGTTCTTCGCATTCTCATCAAATTCCCCCCTTCAAAGTTTGCCTTCACGCCGATGGCTAACCAAAGCCTGCTCTGCCGCAACTTCCGACATCGACATGGTCAAAATCAAGGAAGGTGTTTTTGCCCCCAAACAGAAGAAGGTCGTAGTCTTATGGGACCTTGATAACAAACCTCCTCGCGGGCCGCCATATCAGGCTGCCATGGCGCTCAAACAGGTGGCACAGCGCTTCGGCGACATTGTTGACATGTCTGCCTATGCCAATCGCCACGCATTTATCCACTTACCCCAATGGGTTCTCCACGAACGCCGTGAGCGGAAGCAAATTGATATTCTGGAGCGTCAAGGAGTGATCAAGCCTTCCGAGCCGTATGTTTGTGGGGTTTGCGGCCGCAAGTGTAAAACTAATTTCGACCTGAAGAAGCATTTCAAGCAGCTCCATGAGCGAGAGCGTCAGAAGAAGCTGAATCGAATGAGGTCGCTTAAGGGGAGAAAGCGTCAGCGTTATAAAGAGAGGTTCATATCTGGGAATCATAAGTACAATGAGGCAGCGAGGTCTTTGATTACCCCTAAGTTAGGATATGGGCTCGCTTCGGAGTTAAGGCGCGCCGGAGTTTTTGTGAAGACGGTAGAGGATAAACCGCAAGCAGCGGATTGGGCACTGAAGAGGCAGATGCAACATTCGATGACCCGAGGCATAGATTGGTTGTTTCTGGTGTCAGACGATTCGGATTTCTCGGAGATGTTGAGGAGGGCGAGGGAGGCAAATTTGGGAACGGTAGTCGTGGGTGACTGGGACAGGGCATTGGGGCGCCACGCCGACTTATGGGTTCCTTGGATTGGAGTTGAAAATGGAGAGCTTGCAGAGATAGATTTAGTGCCTGAGAACAGAAGGAGAAGAGAGTCTTTTGTTAAAGATGATAGCTTCTTTTCACTGTTGCATTATGATGGAGATACTGTTGGCGTGAGCGATTTGGATGGGATTGTGAATGAGCTTGCTGCAATGAGAACCGAGTTTAATGATGTGAGAAGTGAAACATATTCAGATCAGGATGAGGAACAAGAATGGGTTTTGGAAGAACTGGATAAAAATCATATGTTAGTGAGTAGTGAGGATGAGGAAACAGAAGAAGAAGATGGGTTTTATTGA 1272 0.4811 MNTLSLSYAIEPIPSSLFLCNRRSQSSLHFWPSPFPSFRNTVFFAFSSNSPLQSLPSRRWLTKACSAATSDIDMVKIKEGVFAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDIVDMSAYANRHAFIHLPQWVLHERRERKQIDILERQGVIKPSEPYVCGVCGRKCKTNFDLKKHFKQLHERERQKKLNRMRSLKGRKRQRYKERFISGNHKYNEAARSLITPKLGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMTRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDWDRALGRHADLWVPWIGVENGELAEIDLVPENRRRRESFVKDDSFFSLLHYDGDTVGVSDLDGIVNELAAMRTEFNDVRSETYSDQDEEQEWVLEELDKNHMLVSSEDEETEEEDGFY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0278 423 CDD PIN_LabA-like 175 305 - -
Dere04g0278 423 ProSitePatterns Zinc finger C2H2 type domain signature. 167 188 IPR013087 -
Dere04g0278 423 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 59 379 - -
Dere04g0278 423 Coils Coil 185 205 - -
Dere04g0278 423 Gene3D - 82 320 - -
Dere04g0278 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 193 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0278 Dere-ChrDere04 2828977 2830248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0278 16 359 C2H2 Transcription Factor Family AT5G52010 67.324 1.51e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0278 None None None