Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0277 ATGGAAGCAAGAGAGTATTGTAGAAGGAGGTCGAAGGCAGAGAAGCGAAAGCAGGAGGGAGCGAGAGAGAAGCCGTACAGAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCGAACAAGAGGTCGAGGCTGTGGTTGGGATCCTACACCACTCCGGTGGCCGCCGCTCGGGCATACGACACCGCCGTTTTCTATCTCAGAGGCCCTTCGGCTCGCCTTAACTTCCCCGAGTTGTTATTCCAAGACGACGACCACCGTCATGTCGCCCACGGCCACATGTCCCCCGATTCCATACGCAAGAAGGCCACCGAAGTCGGCGCCAGAGTTGACGCTCTCCAGGCCGCTCTTCATCACTCCGATCCTCATATTCAAACCTCCTCCGACAAACCCGACTTGAATGAGTTCCCCAAACCCGAAGACCCTCTTCAGGATTACAATTAG 459 0.5599 MEAREYCRRRSKAEKRKQEGAREKPYRGIRMRKWGKWVAEIREPNKRSRLWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDDDHRHVAHGHMSPDSIRKKATEVGARVDALQAALHHSDPHIQTSSDKPDLNEFPKPEDPLQDYN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0277 152 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Dere04g0277 152 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 MobiDBLite consensus disorder prediction 128 144 - -
Dere04g0277 152 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Dere04g0277 152 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Dere04g0277 152 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 146 - -
Dere04g0277 152 MobiDBLite consensus disorder prediction 121 152 - -
Dere04g0277 152 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Dere04g0277 152 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0277 Dere-ChrDere04 2822973 2823431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0277 8 127 AP2-EREBP Transcription Factor Family AT1G46768 66.400 1.80e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere04g0277 AP2 4.2e-11 CL0081