Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0276 ATGGGAGAGCTTCATTCCTCCAAAGCCACTTTGCCTGCCTGTCTTCCTCCTGGTTGTCGATTCTACCCTTCCGAAGAGCAGCTCCTCTGTCACTATTTAGTCAATAAGAACGCCGGTAATAATTTCCATGGCTGCAATCTCATCCGCGAGCTTGACCTGTACGAACATGACCCTTTCCATTTGCCGGAAGTTGCGTGCTTTTCCTATGGTTATCGGGGAAGGAAGAGGCATTGGTACTGTTATTCTGTCAGGGTTTTGAAGGATACTGGAAGGAAGACTAGGAAGGTCAAGAGCGGGTATTGGATGAGGCAGGGTAGGGTTAGGAATGTTTTGAGTGGTGGTGAGAATGTGGTATTGGGCACCAGGACCACTTTCGTTTTCTATTTGGGGAATTCCCCCAAGAACGCCAGCAGGACGAATTGGATGTTGTATGAGTATGCATTAGTTGATGACCTTAAGGCCTCATTTGTTGTTTGTCGTGTATTTGTTAGACCATCTCATCAGAATAGTGCGTCAGAGAATGGTCTGAGCTCTTGTGCAGAAGAAAGTTTCTCAGCTGTACGTCACATTGGCATTCAGCATGATGGATTAGTTTCACCTGACATTATTGAGGCTCAAGTGCATGGCGACTGCTCTTTTGACAGAAAGAATGAGATATCAATGTCTCCCCTGAGACATGCTAGTGAACTAGAAGAGCATGAGGTTGCGCCTGCATCAATGTCTGTTGCTACTTTCCAGTGTTGTGCGGGTCCTCAAGGCAGTCAACCGGGAAAGTTTTCTGGAATTCCTGGTGGTAATGCAAGACTTGTTGATGCCTTGACATCTCAGCAACATTTACTTTCAATTCTGGAGGAGGATTTCATAGAGTTGGATGATCTAGCATGA 885 0.4599 MGELHSSKATLPACLPPGCRFYPSEEQLLCHYLVNKNAGNNFHGCNLIRELDLYEHDPFHLPEVACFSYGYRGRKRHWYCYSVRVLKDTGRKTRKVKSGYWMRQGRVRNVLSGGENVVLGTRTTFVFYLGNSPKNASRTNWMLYEYALVDDLKASFVVCRVFVRPSHQNSASENGLSSCAEESFSAVRHIGIQHDGLVSPDIIEAQVHGDCSFDRKNEISMSPLRHASELEEHEVAPASMSVATFQCCAGPQGSQPGKFSGIPGGNARLVDALTSQQHLLSILEEDFIELDDLA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0276 294 Pfam No apical meristem (NAM) protein 16 148 IPR003441 GO:0003677|GO:0006355
Dere04g0276 294 Gene3D NAC domain 24 168 IPR036093 GO:0003677|GO:0006355
Dere04g0276 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 215 - -
Dere04g0276 294 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Dere04g0276 294 ProSiteProfiles NAC domain profile. 15 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0276 Dere-ChrDere04 2795910 2798052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0276 14 183 NAC Transcription Factor Family AT1G52890 35.556 5.85e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere04g0276 NAM 7.7e-24 No_clan