Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0275 ATGCAAGGGCGAAGTGGTAAAATAGGTTCCTTACCTGGAACCTTAGAATTTGATTGTGGATCTACTTCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGGATAGCACAAGGAATCCCGCAGAAAATCAAATGCCTGAATTTATACTTTCACCTGGTGATATGAACCCATTGTATGCAAATTCTGTTAACCATGAATGGAAGAACTTGAGTGGTTGGAGCTTTGGGGAGCCAAGTTCCAGTGGTCCACAAACTGAGATTAACAATAATGAGCAGAAAAGAGAACTTGGATGGTCATCTTCAACAAGTGCTGGTGCTTCAGCAGGTTCAAGTTTAGAACAACACTTTGAACCAACTAATGTTCTTTCTTTGGACAATGTCAATACAAGTCCTATGTGTATGCACAACTCCAATCCTCATTCTGTGTTGCAGAATCTCAACTTAAATGCCAGTTTGGCAGACAGTGGCAGTGATGCTAGTCAACATCTTGAGCATCGTGAATCAGGAAATGAGTCTATCCCACCTACTATTGGTTCTGCTCCTTTTTTTCTTCCTTCTGAAAATAACAGGTTCTTGGTTGATGATACTGTTGGTAGGCCAGGTTGTTCTCTTGATGCTCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCTGGTAGTGGAAGTTCTAGCTACAGCCAGCATGCAGAAAGTAGTGCCAGGCACACACTTCCTACTCAGAATAATGCACGGAGCAGTTTAAGCCGATCTGTTTCATCAGCACAGGTAAGTTCAAGACTTGGCCTGGGTATGGGCAATGATATGGGGGATGAATCCTCAGAGAGCATTAACGAGTTGAATGTTGCAGGAAGCTCTCATAGCTTCCACAGGAATTTCCGTTTGAGGATAAGTCCTTCAAACCAACAAGATTCCGTTCCTCCTGTTTCATTCTCAAATGGGAATGTAATTAGGCATTCTACAGTTTCTTCATCATCTCCTATGTCACATAGGTTTCATCTTGCTGATAATTCTCTGGACTTGAGGTCAGCACCATCACCAGATAATATGGTTCCTCAAAGCCAGCCCCTTGGATCTAATCCTCCTTCTTTACCCAGGAATATGCAATCATTTAGATGGGGTGGCAGTTCTATCTCAAGAAACAGCCATTTGTCTAACTCAATAATTTGTTCAGACAGAGATCATCTACCACATGAAGAAGCAAGCTCAAGAAGTATGTCTAGAAACATATTAGAACACCCAATGTTAGTACCAGCAGCTGATTTAAGAAATTTGGTACGAAATCCAACGAGTAGAGCTTCAAGTAGTGCAAATTTAAATATCCCAGGAAATGTTGCTTCCTCATCACGGACTGGATCAAATTCAGCTGTCAATCCGCCATCTGCCTCAGCCTGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGAAGGTTATCTGAATATGTTCGTAGATCATTGTTGTCTTCTGGTTCCGAAGCTGCTGGAGGTTTAAGCAACAACTATTCTATGTTGCGCTCTGCTCCTATTGCTTCATCTGAAGCAAGGACTCTATCATCTCGGGCTAGTAGCCAGGGACGTCATCAGTCACACTCAAGATCATCATCATGGTGGGAGAGGCAAGGTGATAGTGACTTCAGAGTTCCCTATTCATTACAAACTTTGGCTGTTGCTGGTGAAGGCAGCGGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTCATGCGTAGAGGTGGGAACCTTCGATTTGAGGATGTTATGATATTTGACCATTCAATATTTTCTGGAATGGCTGATATTCATGATCGACACAGGGACATGCGACTCGATGTCGATAATATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGTATTGGAAATGTGAGTACTGGATTGGGCGAGGAAACCATATTGAAACTACTGAAACGTAAGAAGTATTCAGTTGAGGAAGGATCTCAAGTTGAGGCAGAACCCTGCTGTATTTGTCAGGAAGAGTTCAACAACGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTACCATTCCGTCTGTATCAAACAGTGGCTAATGCATAAGAATCTCTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2139 0.4282 MQGRSGKIGSLPGTLEFDCGSTSSNATVDQQICWDSTRNPAENQMPEFILSPGDMNPLYANSVNHEWKNLSGWSFGEPSSSGPQTEINNNEQKRELGWSSSTSAGASAGSSLEQHFEPTNVLSLDNVNTSPMCMHNSNPHSVLQNLNLNASLADSGSDASQHLEHRESGNESIPPTIGSAPFFLPSENNRFLVDDTVGRPGCSLDARRVSCKRKAVEGYVGQSSGSGSSSYSQHAESSARHTLPTQNNARSSLSRSVSSAQVSSRLGLGMGNDMGDESSESINELNVAGSSHSFHRNFRLRISPSNQQDSVPPVSFSNGNVIRHSTVSSSSPMSHRFHLADNSLDLRSAPSPDNMVPQSQPLGSNPPSLPRNMQSFRWGGSSISRNSHLSNSIICSDRDHLPHEEASSRSMSRNILEHPMLVPAADLRNLVRNPTSRASSSANLNIPGNVASSSRTGSNSAVNPPSASAWVSRPNPPQYPRRLSEYVRRSLLSSGSEAAGGLSNNYSMLRSAPIASSEARTLSSRASSQGRHQSHSRSSSWWERQGDSDFRVPYSLQTLAVAGEGSGRLVSELRNVLGLMRRGGNLRFEDVMIFDHSIFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLGEETILKLLKRKKYSVEEGSQVEAEPCCICQEEFNNGDDIGTLDCGHDYHSVCIKQWLMHKNLCPICKTTGLAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0275 712 MobiDBLite consensus disorder prediction 221 266 - -
Dere04g0275 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Dere04g0275 712 MobiDBLite consensus disorder prediction 344 373 - -
Dere04g0275 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 207 710 IPR045191 GO:0061630
Dere04g0275 712 Pfam Ring finger domain 665 706 IPR001841 -
Dere04g0275 712 MobiDBLite consensus disorder prediction 347 373 - -
Dere04g0275 712 MobiDBLite consensus disorder prediction 520 542 - -
Dere04g0275 712 MobiDBLite consensus disorder prediction 152 180 - -
Dere04g0275 712 MobiDBLite consensus disorder prediction 434 473 - -
Dere04g0275 712 SUPERFAMILY RING/U-box 652 708 - -
Dere04g0275 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 709 IPR013083 -
Dere04g0275 712 SMART ring_2 665 705 IPR001841 -
Dere04g0275 712 MobiDBLite consensus disorder prediction 434 478 - -
Dere04g0275 712 MobiDBLite consensus disorder prediction 218 280 - -
Dere04g0275 712 FunFam E3 ubiquitin-protein ligase MBR2 633 710 - -
Dere04g0275 712 MobiDBLite consensus disorder prediction 95 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0275 Dere-ChrDere04 2786930 2790549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0275 210 712 C3H Transcription Factor Family AT2G15530 37.548 6.01e-75 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1629 05 26021962 26025636 Dere04g0275 04 2786930 2790549 CCT
Dere04g0275 04 2786930 2790549 Dere04g0275 04 2786930 2790549 ECH