Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0270 ATGGCTCTTCTGCTAGACAATTGCGAGGGCATATTGCTGTCCCTAGACTCTCACAAATCTGTTCCCGCACCCTTCCTCACCAAGACTTACCAGCTCGTTGATGATCCCACCACCGATCACATTGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTCTGGCGTCCCCCAGAGTTCGCTAGGGATCTTCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCCGGAAGATTGTGCCGGACAGATGGGAGTTTGCCAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGCGAGATCCACCGAAGGAAAACGGCTCAGCCTCATCTTCATCATCAGGTTGGGGTGAACCATCACGGGGTCAACGTCCCCACTTTCTTTCCCTTCCCCTCCAGACTGAGCATCTCTCCCTCCAACGACTCCGACGACCAGCACAATTGGTGTGACTCCCCTCCGCTCGCTTCTCCAACGCGTGTTTCCACACTCGTTAACGCTCCCAACTACAACACTTCCGTCACTGCGCTTTCCGAGGACAATGAAAGGCTCAGGCGAAGCAACAACATGCTCATATCCGAGCTCGCACACATGAAGAAGCTCTATAACGACATCATCTACTTCGTTCAGAACCATGTCAAACCCGTCGCTCCTAGCAACAATTACCCGTCTTCTTTGTTATCCCCACCTTCCCCCGTAACTAATACTACTACTACAAATGTTTCGATGGTGCAAAGGCCCCTCAATCAGCTTTTGGGGTATTATTCCACAAACACGAAGCATGCTCCGCCTCTTGTGAACTCACCTACCAACACATCAAAGAGCTCAATAACCATAGTTGAAGAGCCCAGTAGCAACAGCTGCAAGACCAAGCTCTTTGGTGTATCGCTTCAATCTAAGAAAAGGGTGCACCCCGAGTATGGTTTTAATCCAATCAATTCATCGGACACCAACAAGGCTCGTTTGGTCTTGGAAAAGGATGACTTGGGCTTGAATCTCATGCCTCCTTCCACTTTTACATTAATGCCCAGAGAGAGAGAGAGAGGAGTTCCTCAAAGTTTTATTGGGTCAAAAGCTGAGAGCTGA 1113 0.4978 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPHLHHQVGVNHHGVNVPTFFPFPSRLSISPSNDSDDQHNWCDSPPLASPTRVSTLVNAPNYNTSVTALSEDNERLRRSNNMLISELAHMKKLYNDIIYFVQNHVKPVAPSNNYPSSLLSPPSPVTNTTTTNVSMVQRPLNQLLGYYSTNTKHAPPLVNSPTNTSKSSITIVEEPSSNSCKTKLFGVSLQSKKRVHPEYGFNPINSSDTNKARLVLEKDDLGLNLMPPSTFTLMPRERERGVPQSFIGSKAES 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0270 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 265 IPR027725 -
Dere04g0270 370 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 Gene3D - 17 116 IPR036388 -
Dere04g0270 370 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 FunFam Heat stress transcription factor B-4 17 115 - -
Dere04g0270 370 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere04g0270 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0270 Dere-ChrDere04 2748477 2750119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0270 1 347 HSF AT1G46264 57.600 1.00e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere04g0270 HSF_DNA-bind 3.3e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1624 05 25939513 25940675 Dere04g0270 04 2748477 2750119 CCT
Dere04g0270 04 2748477 2750119 Dere04g0270 04 2748477 2750119 ECH