Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0269 ATGGACACTAGAACCAGTACTGATGAGTTAAAGTGGTCATGGGCACGGGCATGGGCATCGCATGAGATGGACACGACGATGCAGCCCTCGGAATTCTCTGGGGCTTACACCGACTATGAAGTGTCCGATTTGCGAGTGCCACCACCTGAGTTCTCTGGAGCGACTAACGTGACACAGATGATGGAGGAACCCCATGTGGGTAATTGGTGGTCATTCCCAACCCCACAAGCACAAGCGCAAGCTTCGTCGACGGAGATGAGGGAGATGATGTATAGGATAGCAGCGATGCAGACAATACACATAGACCCGGAGTCAGTGAAGGCTCCTAAGAGGAGGAACGTCAAGATATCAAAGGACCCTCAGAGCGTGGCGGCTCGGCATCGCAGAGAAAGAATAAGTGAGAGAATCAGGATATTACAGAGACTGGTGCCTGGTGGCACTAAAATGGACACCGCTTCTATGTTAGATGAAGCCATTCACTACCTCAAGTTCCTCAAGTCCCAGATTCAGTCCCTCCAGCGAGCCTCCTCTAATACGCCACCACTCCCTCTCTTATCGTCTTGTTCCAATCACACCTCTAATTATCTTTCTACGCATAAACCATTTCAACCTCCTTCTCACAACCCTGATTACCAGTATTATCAAGATGCATAA 654 0.4954 MDTRTSTDELKWSWARAWASHEMDTTMQPSEFSGAYTDYEVSDLRVPPPEFSGATNVTQMMEEPHVGNWWSFPTPQAQAQASSTEMREMMYRIAAMQTIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYLKFLKSQIQSLQRASSNTPPLPLLSSCSNHTSNYLSTHKPFQPPSHNPDYQYYQDA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0269 217 Pfam Helix-loop-helix DNA-binding domain 126 165 IPR011598 GO:0046983
Dere04g0269 217 Coils Coil 155 175 - -
Dere04g0269 217 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 206 IPR045843 GO:0003700|GO:0006355
Dere04g0269 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Dere04g0269 217 MobiDBLite consensus disorder prediction 196 217 - -
Dere04g0269 217 FunFam BHLH transcription factor 119 181 - -
Dere04g0269 217 Gene3D - 115 180 IPR036638 GO:0046983
Dere04g0269 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 176 IPR036638 GO:0046983
Dere04g0269 217 SMART finulus 122 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0269 Dere-ChrDere04 2740432 2741085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0269 86 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.500 5.83e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere04g0269 HLH 6.8e-07 No_clan