Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0261 ATGTCGCCAGTTTTGTTCTGGTTGGTATTACTATCTCCGTCGATATGGTTAAAAGCAAACGCCGGAGACAAAGGAGTCAACTGTTTAAACTCGCCGCCCAGTATTGTAAATGTAGGTGCTGTCATTGACTTGAATTCAAGCCTGGGTAAGGAGCAAAAGATTGCTATGGAAATTGCAATCCAAGATGTCAATCGTTTCAGTTCGTCTAATAAGCTTGTTTTGAAGTTCAATAATTCTGGGGGAAACCCTGCTCGTGCTGTCACTGCTGTCTTAGATCTTGCGAAGAGCAAACAAGTTCACGCAGTGATAGGAATGCAACTGAATGAAGCAAGTTTGGCCGCGAAGAGTGAGGTGGCTAATGATTTTTCCCGTCATTTGGAATGCATTGCAGCTATCGTTGGCCACTTCAGGTGGCGAAAGTTTGGATTGAAATACCCCAAAGAAGAAAACCCACAACCAAGTATCTTTGCACTTCGAGCTTACGATACCATTTGGGCCATTTCTAATGCTGTGTTGAAATCACAAGGAACATGTTCCCTCAAAGAATTACCAGAAAATATCCTATCCAGTAATTTTGGGGGCCTCAGTGGCAAGATAACGTTCAGAAAAAGAAAATTGCAAGAGTTACCGAGCTTTAAGATAGTCAATGTTTTCGGAAGAAGTTATAAAGTGGTGGCATACTGGTCACCGGTATTTGGGCTCTCAGAGATCGACGCGAAGAATGAGACACGCAGTTTGACCAATGCTTTTGCTGGAGTCGTCGGTCCAATGAATTGGCCAGCTGTGGAAAGCCTGCCATATCATTTGCACTATGACTTTGTTCCCTACGATGGGCGTTATGATGAGTTGATTGAGCAAGTCAACAACAAGGTTTTCCATGCTGCTGTTGGAGATCTAGAAATAATGGCAGAACGATCTCGGCATGTGCAATTTTCACATCCGTATGTGGATTCTGGCATTGCGATGGTTGTGAGAGTAAAACCAGATAGATCCAAAGAGACGTGGATGTTCATGCAGGCCTTCACAAAAGAAATGTGGCTGTTAATGGGAGCAATGCACCTGTTCGTGGCATTTGTCATCTGGATCATCGAAGGTGAAGATAACTCAGAGTTGAATGGATTCGGGGCCATGCTTTGGTTCTCTGTCACCATATTATTCTTCGCACATAGAGAACCCGTGAGAAGCAGCTTGGCCCGGCTTGTCCTGGCACCTTGGTTATTTGTTATTCTGGTGGTGACGTCTAGTTTCACAGCAAGCCTGACATCTATGATCACAGTGTCGCATCTTGAACCATCCGTGCCAGATATACAGACGCTTCAGAGAACAAACGCCATTGTAGGGTGCAATAAGAGATCTTTTCTGGTCAATTATCTGATTGATGAGCTGAATTTTAAGCCTGAAAACATTCGGAAGTTTGATTCCGTTACGGATTACCCCAGAGCCTTTGAGAACAAGGAAATTGCTGCAGCTTTCTTAATTGCTCCCCACGCTGAAGTCTTCCTTGGCACCTATTGTAAAGGCTACATCCAAGCAGGACCCCCCATGAAGCTCGGTGGTTTAGCCTTTGCATTCCCTAAAGATTCGACTTTGGCGTTGGACATATCGGAGGCGATTCTAAAAGCGATTGAATGTCGACAAGTCCAACACTTAAAGGACGATATGCTATCCGGCACTAATTGTGGCACTTCAAACGACAAGATAAAAGATGAACAATTAGGTCCTCAGCCCTTCTTTGGGCTATTCTACATTTCAGGCTTCGCTGCTATCTCTGACGACAACTCACTGATAAGACAGCCTTGCCACAGCTTTGTATACTTCACACCAACACATGCCAATCGCCAAGTAGTCCGCCTGTGTGTCATTTTCACGAACGCTCCCAGATCTCTCCTACGAAATCCTCTGACTCCGAAGCTTCCACCATTTCTGCAAGCTTTCGTTCCTCTCTGA 1947 0.4479 MSPVLFWLVLLSPSIWLKANAGDKGVNCLNSPPSIVNVGAVIDLNSSLGKEQKIAMEIAIQDVNRFSSSNKLVLKFNNSGGNPARAVTAVLDLAKSKQVHAVIGMQLNEASLAAKSEVANDFSRHLECIAAIVGHFRWRKFGLKYPKEENPQPSIFALRAYDTIWAISNAVLKSQGTCSLKELPENILSSNFGGLSGKITFRKRKLQELPSFKIVNVFGRSYKVVAYWSPVFGLSEIDAKNETRSLTNAFAGVVGPMNWPAVESLPYHLHYDFVPYDGRYDELIEQVNNKVFHAAVGDLEIMAERSRHVQFSHPYVDSGIAMVVRVKPDRSKETWMFMQAFTKEMWLLMGAMHLFVAFVIWIIEGEDNSELNGFGAMLWFSVTILFFAHREPVRSSLARLVLAPWLFVILVVTSSFTASLTSMITVSHLEPSVPDIQTLQRTNAIVGCNKRSFLVNYLIDELNFKPENIRKFDSVTDYPRAFENKEIAAAFLIAPHAEVFLGTYCKGYIQAGPPMKLGGLAFAFPKDSTLALDISEAILKAIECRQVQHLKDDMLSGTNCGTSNDKIKDEQLGPQPFFGLFYISGFAAISDDNSLIRQPCHSFVYFTPTHANRQVVRLCVIFTNAPRSLLRNPLTPKLPPFLQAFVPL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0261 648 FunFam Glutamate receptor 334 467 - -
Dere04g0261 648 SUPERFAMILY Periplasmic binding protein-like II 268 547 - -
Dere04g0261 648 Gene3D - 129 206 - -
Dere04g0261 648 Gene3D - 333 464 - -
Dere04g0261 648 Pfam Ligand-gated ion channel 550 587 IPR001320 GO:0015276|GO:0016020
Dere04g0261 648 SUPERFAMILY Periplasmic binding protein-like I 138 229 IPR028082 -
Dere04g0261 648 Pfam Bacterial extracellular solute-binding proteins, family 3 271 549 IPR001638 -
Dere04g0261 648 SMART GluR_14 231 557 IPR001320 GO:0015276|GO:0016020
Dere04g0261 648 Gene3D - 34 124 - -
Dere04g0261 648 SUPERFAMILY Periplasmic binding protein-like I 32 149 IPR028082 -
Dere04g0261 648 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 137 589 IPR015683 -
Dere04g0261 648 Gene3D - 267 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0261 Dere-ChrDere04 2676908 2680794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0261 55 589 Ion Channels AT2G17260 28.193 9.42e-67 233