Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0248 ATGTCAACCAGGAGTGAACACCAAACGGTCCCCCTTTCGGTGCTTCTGAAGCGTGAATTGGCAAGCGAGAAAATTGAAAAACCTGAAATTCTGCATGGTCAAGCCAGCCAGAGCAAAAAGGGAGAAGATCTCACGCTGCTGAAAACGGAATGCCAGAGGGTGGTAGGAGATGGGGTGTCAACATATTCTGTTTTTGCGCTATTTGATGGACACAATGGATCTGCGGCTGCTATTTATGCCAAGGAGAATCTCCTCAATAATGTTTTGACTGCGATTCCTTCAGATCTTAACAGAGATGAGTGGGTAGCAGCATTGCCCAGGGCTTTAGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAACAGAAAGCACAAACATCGGGAACTACTGTGACCTTTGTGATTATAGAAGGATGGGTTGTCACCGTTGCATCTGTTGGCGATTCCCGTTGCATACTTGAATCTGCTGAAGGTGGGGTTTATTACCTGTCAGCAGATCATAGGCTAGAAACCAACAAAGAGGAGGTGGCACGTATCACGACTAGTGGGGGTGAGGTTGGTCGGCTAAATACTGGTGGGGGTGCAGAGATTGGTCCTTTGCGATGTTGGCCTGGTGGCTTGTGTCTTTCAAGATCCATCGGTGACATGGATGTTGGTGAATTCATTGTTCCTGTACCTTACGTAAAGCAAGTGAAGCTGTCCACTGCTGGAGGCAGGCTTATTATATGCAGTGATGGTGTTTGGGATGTTTTATCTGCAGAAATAGCCCTTGATTGTTGTCGTGGATTGTCACCAGAGGTTGCAGCACCACACATCGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACGACCTGCATTGTTATTGATATTTTACCCCCAGAGAAACCACCTGCTCCGCCTTTGACACAGTCCAAGAGACCAGGAAAAGGAATGTTCAAGTCCATGTTTCGCAAGAAGTCTGCAGAATCATCTTCTTATAATGAAAAAGATTATATGGAGCCTGATGTGGTAATGGAACTGTATGAGGAAGGATCTGCTATGCTTTCGGAGAGATTAGATACAAAATATCCCCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTGTGTCAACTAGAGATGAAACCTGGGGAGGGTATATCGATACACGAGGGTGCACCCAACCCAGGAAAATTGCGTCCCTGGGATGGTCCATTCCTTTGCTTAAGTTGTCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGAACATCAGATAGACTTAGCAGCGGGAGTGACTGA 1287 0.4553 MSTRSEHQTVPLSVLLKRELASEKIEKPEILHGQASQSKKGEDLTLLKTECQRVVGDGVSTYSVFALFDGHNGSAAAIYAKENLLNNVLTAIPSDLNRDEWVAALPRALVAGFVKTDKDFQQKAQTSGTTVTFVIIEGWVVTVASVGDSRCILESAEGGVYYLSADHRLETNKEEVARITTSGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRLIICSDGVWDVLSAEIALDCCRGLSPEVAAPHIVKEAVQAKGLRDDTTCIVIDILPPEKPPAPPLTQSKRPGKGMFKSMFRKKSAESSSYNEKDYMEPDVVMELYEEGSAMLSERLDTKYPLCNMFKLFMCAVCQLEMKPGEGISIHEGAPNPGKLRPWDGPFLCLSCQEKKEAMEGKRTSDRLSSGSD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0248 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Dere04g0248 428 FunFam probable protein phosphatase 2C 12 32 299 - -
Dere04g0248 428 Gene3D - 32 298 IPR036457 -
Dere04g0248 428 SMART PP2C_4 21 291 IPR001932 -
Dere04g0248 428 Pfam Protein phosphatase 2C 57 277 IPR001932 -
Dere04g0248 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Dere04g0248 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Dere04g0248 428 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722|GO:0006470
Dere04g0248 428 CDD PP2Cc 62 293 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0248 Dere-ChrDere04 2540741 2544646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0248 1 428 PP2C-type Phosphatase Gene Family AT1G47380 80.510 0.0 716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1582 05 25432194 25436734 Dere04g0248 04 2540741 2544646 CCT
Dere04g0248 04 2540741 2544646 Dere04g0248 04 2540741 2544646 ECH