Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0238 ATGCAATCAAACGGCTCTGATTCGCAACAACAGCAACAGACGGAGCATAATCAACGGCAACAGCAAACGCAGACGCCGCCGCCACCACAGCCACTAGCATTACCGCAACAGTGGATGCCGATGCAATACCCGGCGGCGGCTATGGTAATGCAGCATCAAATGTTGCCACCTCAACATTATGCGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTTTCAGCAGTTACCACATGTATCTCACCCTCAGCAGCATCAGCATCAGGGATACACCGGCGAGAACAAGACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAAAATTATCTCCATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCTGAGGGTTATGGATTTGTGGAATTCTATTCACATGCCACGGCCGAGAACGTTTTACAGAATTATGCTGCCATTTTGATGCCCAATACTGATCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACTGGAGACAAACGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCTAATACTGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTCATTATTGTTCTACCAGGCCTATGCGTATTGGTGCTGCAACCCCTAGGAAATCTTCTGGCTATCAACAGGGAGGTCATGTGTCAAATGGAACTTCCAGCCAATCTGAAGCAGATTCAACGAACACAACTATATTTGTTGGAGGACTCGACCCTAACGCTACAGATGACGATCTTAGGCAGCCATTCTCTCAGTATGGTGAGATAGTCTCTGTCAAAATACCTGTCGGAAAGGGATGTGGATTCGTACAATTTGCAAACAGGAATAATGCTGAAGAAGCGTTGCAGAAGCTAAATGGGACAGTGATTGGCAAACAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTGGAGTATGGCAACCCTTGGAGCGGGGCGTATTATGGAGGCCCTGTTTATGATGGTTATGGATATGCTTTGCAACATCCTCATGACCCAAGCATATATGCCGCTGCATATGGGTCTTACCCCATATATGGAGGCCACCAACAGCAAGTAAGCTAA 1278 0.4624 MQSNGSDSQQQQQTEHNQRQQQTQTPPPPQPLALPQQWMPMQYPAAAMVMQHQMLPPQHYAPPPPQPYMPYHQFQQLPHVSHPQQHQHQGYTGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYAAILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGHYCSTRPMRIGAATPRKSSGYQQGGHVSNGTSSQSEADSTNTTIFVGGLDPNATDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRVEYGNPWSGAYYGGPVYDGYGYALQHPHDPSIYAAAYGSYPIYGGHQQQVS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0238 425 MobiDBLite consensus disorder prediction 267 291 - -
Dere04g0238 425 FunFam Polyadenylate-binding protein RBP47B 177 279 - -
Dere04g0238 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 367 IPR000504 GO:0003723
Dere04g0238 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 371 - -
Dere04g0238 425 FunFam Polyadenylate-binding protein RBP47B 95 175 - -
Dere04g0238 425 CDD RRM3_NGR1_NAM8_like 294 365 - -
Dere04g0238 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Dere04g0238 425 Gene3D - 176 282 IPR012677 -
Dere04g0238 425 Gene3D - 283 397 IPR012677 -
Dere04g0238 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Dere04g0238 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 158 IPR000504 GO:0003723
Dere04g0238 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 259 IPR000504 GO:0003723
Dere04g0238 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 360 IPR000504 GO:0003723
Dere04g0238 425 CDD RRM2_SECp43_like 188 267 - -
Dere04g0238 425 CDD RRM1_SECp43_like 97 177 - -
Dere04g0238 425 FunFam Polyadenylate-binding protein RBP47 280 397 - -
Dere04g0238 425 SUPERFAMILY RNA-binding domain, RBD 188 369 IPR035979 GO:0003676
Dere04g0238 425 Gene3D - 95 175 IPR012677 -
Dere04g0238 425 MobiDBLite consensus disorder prediction 269 291 - -
Dere04g0238 425 SUPERFAMILY RNA-binding domain, RBD 61 176 IPR035979 GO:0003676
Dere04g0238 425 MobiDBLite consensus disorder prediction 1 23 - -
Dere04g0238 425 MobiDBLite consensus disorder prediction 1 35 - -
Dere04g0238 425 SMART rrm1_1 296 363 IPR000504 GO:0003723
Dere04g0238 425 SMART rrm1_1 97 172 IPR000504 GO:0003723
Dere04g0238 425 SMART rrm1_1 190 264 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0238 Dere-ChrDere04 2446989 2450882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0238 98 376 Eukaryotic Initiation Factors Gene Family AT4G34110 28.421 1.36e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2613 05 37000989 37004052 Dere04g0238 04 2446989 2450882 CCT
Dere04g0238 04 2446989 2450882 Dere04g0238 04 2446989 2450882 ECH