Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0232 ATGGAAGCAATGAACAGATGCTCCTCTTCCACTTCTTCCTCAGACTCTTCCTCTTCGAGCTCTTCGTTATCAAGCAAGCCCCAAAAGCATCACTACAAACCCGACAGAATCAAAGGCCCATGGAGCGCCGAAGAAGACCAGATTCTGACCCGACTCGTTGAAAGATACGGGCCCCGAAACTGGTCCTTGATAAGCCGTTACATAAAGGGAAGGTCAGGCAAGTCGTGCCGGCTGAGATGGTGTAACCAGCTGAGTCCGAGCGTGGAGCACCGTCCATTCTCCCAAGAAGAGGACGAGACCATACTGGTGGCTCATGCCCAGTACGGCAACAGATGGGCCACCATTGCCCGCCTACTCCCGGGTCGGACCGATAATGCCGTCAAGAACCACTGGAATTCCACGCTCAAGAGAAGGGTGAGGGGGCAGCGTGGGGTGCAGGGAGAAGGCGTTGGAGATGCTGACCAGAGGGTTTTTGATTCTTCGAGATCTATGCAGCCCTGCATGGGATTGGAATTGGAGAATGACCCGTTGACCGCATTGACTCTGGCGCCTCCCGGCGACAGCGGGGCGGTGGCTGATGGCCGACCAAGTTCCGAGAGTGTGCCGGCGGGGTTTTGGGATGCGATGAGGGATGTGATAGCGAGAGAAGTCAGAGAATATGTTTCTTCCGCGTTTTCTGAGAACTCACGATTCCATTGA 699 0.5508 MEAMNRCSSSTSSSDSSSSSSSLSSKPQKHHYKPDRIKGPWSAEEDQILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSQEEDETILVAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRGQRGVQGEGVGDADQRVFDSSRSMQPCMGLELENDPLTALTLAPPGDSGAVADGRPSSESVPAGFWDAMRDVIAREVREYVSSAFSENSRFH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0232 232 Gene3D - 92 139 - -
Dere04g0232 232 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Dere04g0232 232 MobiDBLite consensus disorder prediction 1 27 - -
Dere04g0232 232 FunFam MYB transcription factor 38 89 - -
Dere04g0232 232 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Dere04g0232 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Dere04g0232 232 MobiDBLite consensus disorder prediction 1 39 - -
Dere04g0232 232 Gene3D - 37 89 - -
Dere04g0232 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Dere04g0232 232 SMART sant 89 137 IPR001005 -
Dere04g0232 232 SMART sant 37 86 IPR001005 -
Dere04g0232 232 CDD SANT 92 135 IPR001005 -
Dere04g0232 232 PANTHER MYB PROTEIN-RELATED 38 173 - -
Dere04g0232 232 Pfam Myb-like DNA-binding domain 41 99 - -
Dere04g0232 232 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Dere04g0232 232 CDD SANT 40 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0232 Dere-ChrDere04 2391484 2392182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0232 35 190 MYB Transcription Factor Family AT5G67300 60.759 1.43e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere04g0232 Myb_DNA-bind_6 2.4e-18 CL0123