Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0222 ATGGCTATCCGGGTGACCTTCTCCTACTCTGGCTACTTCGCCCAGAGCCTTGCTTCTTCCGCCGGTTGTCGTGCAGGTAATTCGCGTTGCTTCCAGGAGTGCTGGATCCGCTCTCGCTTATTCGGCCCTGGCCATAAACCTGATCTTGATCCTTCTGGCGGCGTGCGTAATTATCATACCGATTACAGACGGCCAAAATCGAATTGCTGGACTAAGAATTCAGCCTCTATGTATTCTACTATCTCCAGGGAAATTCTGGGTGATAATTGTAATAATCCGATAATATTGGGTTTGATTTCGATAATGAAGTCAACGGTTTGTGTATCGGCTTCATCTGCGGCGACTATGGGTATATGTGGTGTTTCCCCTATTAAGGCCAATTCGATTATTCCCTTCTTAAAGGGATCGAAGAGCCTTCCCAGTAATGAGTTGATTCCCGTTCCTACAACTCGTGAGGTGGATAAAGGACGGACGGAGTTTTATGATGATAGTGATGATGCGATTTCTGGGTACGGTCCCAAAGGTTTTGAGAAGTCAAGCTGGCTATCGCGCTTGTTGAATGTCTGTTCAGAGGATGCGAAAGCTGTGTTTACTGCTTTGACTGTTAGTGTGCTCTTTCGATCGTTCTTGGCTGAACCAAAATCGATTCCCTCGTCTTCGATGTACCCAACTCTGGACGTGGGTGACCGTATTTTAGCGGAAAAGGTTTCCTTCTTCTTTAGAAAGCCTGATGTTTCAGACATAGTCATATTTAAGGTACCTCCAATTTTACAGGAAATTGGTTATAGTTCAGCTGACGTATTTATTAAAAGGATTGTGGCGAAAGCTGGGGACTGTGTAGAGGTTCGTGGTGGAAAACTACTAGTGAATGGCGTTGCTCAAGAAGAGGAGTTCGTTTTAGAGCCACTCGCCTATGAGATGGATCCAGTGGTTGTGCCAGAAGGTTATGTCTTTGTGATGGGTGACAATCGTAATAATAGCTTTGACTCACATGATTGGGGTCCGCTCCCTATCAAGAATATTGTTGGTAGATCAATGTTTCGGTACTGGCCTCCATCTAAAGTATCTGATACCCTTTGTAAACCACCTGCAAATAATTCATTGGCTGTGTCTTGA 1116 0.4498 MAIRVTFSYSGYFAQSLASSAGCRAGNSRCFQECWIRSRLFGPGHKPDLDPSGGVRNYHTDYRRPKSNCWTKNSASMYSTISREILGDNCNNPIILGLISIMKSTVCVSASSAATMGICGVSPIKANSIIPFLKGSKSLPSNELIPVPTTREVDKGRTEFYDDSDDAISGYGPKGFEKSSWLSRLLNVCSEDAKAVFTALTVSVLFRSFLAEPKSIPSSSMYPTLDVGDRILAEKVSFFFRKPDVSDIVIFKVPPILQEIGYSSADVFIKRIVAKAGDCVEVRGGKLLVNGVAQEEEFVLEPLAYEMDPVVVPEGYVFVMGDNRNNSFDSHDWGPLPIKNIVGRSMFRYWPPSKVSDTLCKPPANNSLAVS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0222 371 Pfam Signal peptidase, peptidase S26 193 350 IPR019533 GO:0004252|GO:0006465
Dere04g0222 371 SUPERFAMILY LexA/Signal peptidase 207 356 IPR036286 -
Dere04g0222 371 CDD S26_SPase_I 212 344 IPR019533 GO:0004252|GO:0006465
Dere04g0222 371 FunFam Peptidase/ serine-type peptidase 218 349 - -
Dere04g0222 371 NCBIfam signal peptidase I 195 351 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g0222 371 ProSitePatterns Signal peptidases I serine active site. 218 225 IPR019756 GO:0004252|GO:0016020
Dere04g0222 371 ProSitePatterns Signal peptidases I signature 3. 317 330 IPR019758 GO:0004252|GO:0016020
Dere04g0222 371 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Dere04g0222 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 209 225 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g0222 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 268 280 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g0222 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 312 331 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere04g0222 371 Gene3D Umud Fragment, subunit A 206 362 - -
Dere04g0222 371 PANTHER SIGNAL PEPTIDASE I 178 357 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0222 Dere-ChrDere04 2296159 2298448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0222 221 351 MADS-box Gene Family AT1G29960 33.835 1.73e-14 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0222 04 2296159 2298448 Dere04g0222 04 2296159 2298448 ECH