Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0216 ATGAAAGATGAATCTAACATAGTTTGCTCCAAAATGCTCCTTACATATAGGGAAGGCGCTGACTTAAGTCTGCATAATAATGTGGAGATCAAAGGTCGCATAAAACGCAAGGCATACGTGAGACACCCACACCTTTACCGGCAGGAATTTCAGCGGCGATCTGGACCTGAAAGGACGATGTTGAGGGAAGAAACTGTGGGTTCGAGGAGCGCAAGGCATAGCGCCACTGTTTCTACGGTGTCCAATAAAGTTCTGGTGGCCGTGAAGGCGGAGAGGGTGATCTCCAAGACCGCATTAGCCTGGGCACTCACTCATGTCGTTCACTCTAGTGATTGCATCACGCTGCTGGCTGTATACTTTGGCGAGAAAACTGGCAGAAGATTCTGGAATTTTTCGAGATTGGCGGGAGATTGTACAAACAAACGCCGGGAAAAGTTGCCGGAGCGGATTTATGAAATCTCCGAGTCTTGTGCTCAGATGGTGCTTCAGTTGCACGACCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTCATGAGTACGCCCAGCGGTGCAGCGGCGACTGAAGCAAGATGCAGTGGGTCCAACTGGGTCATACTGGACAAGAAGTTGAAACAAGAGTTGAAGCATTGCATGGATGAACTTCACTGTAGCATCGTAGTGATGAATGGTTCGCAGCCAAAAGTCCTTAGGCTTAACTTAGGATGCTCTGATGAATTCCAAACCCCCTCCTTGTCTGCTGCTTCTTCACCAGGTGTAGATATTGGAAGGCTGCAAGGTCACAGATTGAAGCCCTCCACCCCAATGAGTAGCCCTGAAGAAGTAGCTACTTCTAATACAAAATCTACCTTAGTAAATTCAGACTCAATTTCTGACACGGTGAATTCTTTTTTTCTGGTCTACGAACAAAATCCTCTGTACGAGGGTCAGGGGCCACAGAGAAGGAAACACAGACCAATCATTGAACCAAAAGATTTCGATGACCAGCCACCATTAGACTTCGAAGTGGGTAGGGAAACAATGAGAAAACCTCCAATATCACCTGTGGCTGTGGGTAGTGATAACGAGAGTATGGTTTGGATTCCTAGACACCACTTTGTCGATGAGAAGCCTCAAATAACCAAAAACAATAGAATTAACCGAAGATCTAAATGTCCGACTTCTAAAACTTTACTTGAGAGATTTGTTCATTGTGATCACGAGATGTGCACAGACGAAATAGGACTAAAGCAAGCTCATACTAGAAATTATGTTCTGAACTCGGGCATCAGAGAGACTATTCCTGTGGGCAGAACTTCCTCTGTACCTCCTCCTCTATGTTCACAGTGTCAAAACAAAGCACCAGTTTTTGGAAAGCCTCCTAGACGCTTCAGTTACAAAGAGATAGAGGAAGCTACTGATATGTTTTCTGACGTGAATTTTTTGGCTGAAGGTGGATATGGGGTGGTTCACAAGGGAGTGCTGAGAGATGGCCAGGTCGTTGCTGTAAAACAGTTGAAGTTTAGTGGATCTCAAGCAGATCTTGATTTCTGCAGGGAAGTCCGAGTACTGAGCTGTGCACAACACAGAAATGTTGTGTTGTTGATCGGATTTTGCGTAGAAGGCAATCTGAGGATATTAGTTTATGAGTACATATGCAATGGATCCGTGGAGCTCTACTTACATGGAAACAACAGAGGAGCTTTAGATTGGAATTCACGCTTCAAGATAGCAATAGGAGTTGCACGAGGTTTACGCTACCTTCATGAAGATTGTAGAGTGGGTTGTATAGTGCACAGAGACCTCCGACCCAGAAATATCCTCTTAACCCATGATTTTGAACCTATGGTGGCGGATTTTGGCCTCGCAAGGTGGCAGTCGGAATGGAACATAAATACTGATGATCGAGTGATTGGAACATCAGGGTATCTTGCACCGGAATATCTTGAGGCTGGAAATCTTACGTATAAAGTAGATGTGTATGCATTTGGAATTGTCATGTTAGAGTTAATAACAGGTCAAAGAATTAGTGAGTTGGAACATCTCATAGGACACTCGTTTCTGTCCGAATGCTTTCACCCGCTGCGCATGAAAGAGCCCAATAATATTTTACAAAACCTTCAAATGTTCAATCCATGCTCGGAGTTTGAGGCGTCAGAGGAATTTAATCTTCAGTTGCAAGCAATGGCCCGAGCTGCTTCCTTGTGTCTACGTCTAGATCCTGATGCCAGGCCCCCAATGTCAAAGATCCTCAGAGTGCTGGAAGGAGGCGATCTAGTTCGTCCTATCGGTTTAGACCTAAACTCAGTCGGTAACAGAAGTGGCCATTTAAGCGGATTGACGACCCAGACTCAACCTAAAGGTACAAGAAGTCATTCTCGTAGGCTCTCACATTGA 2373 0.4509 MKDESNIVCSKMLLTYREGADLSLHNNVEIKGRIKRKAYVRHPHLYRQEFQRRSGPERTMLREETVGSRSARHSATVSTVSNKVLVAVKAERVISKTALAWALTHVVHSSDCITLLAVYFGEKTGRRFWNFSRLAGDCTNKRREKLPERIYEISESCAQMVLQLHDQIEVRVKIKVVMSTPSGAAATEARCSGSNWVILDKKLKQELKHCMDELHCSIVVMNGSQPKVLRLNLGCSDEFQTPSLSAASSPGVDIGRLQGHRLKPSTPMSSPEEVATSNTKSTLVNSDSISDTVNSFFLVYEQNPLYEGQGPQRRKHRPIIEPKDFDDQPPLDFEVGRETMRKPPISPVAVGSDNESMVWIPRHHFVDEKPQITKNNRINRRSKCPTSKTLLERFVHCDHEMCTDEIGLKQAHTRNYVLNSGIRETIPVGRTSSVPPPLCSQCQNKAPVFGKPPRRFSYKEIEEATDMFSDVNFLAEGGYGVVHKGVLRDGQVVAVKQLKFSGSQADLDFCREVRVLSCAQHRNVVLLIGFCVEGNLRILVYEYICNGSVELYLHGNNRGALDWNSRFKIAIGVARGLRYLHEDCRVGCIVHRDLRPRNILLTHDFEPMVADFGLARWQSEWNINTDDRVIGTSGYLAPEYLEAGNLTYKVDVYAFGIVMLELITGQRISELEHLIGHSFLSECFHPLRMKEPNNILQNLQMFNPCSEFEASEEFNLQLQAMARAASLCLRLDPDARPPMSKILRVLEGGDLVRPIGLDLNSVGNRSGHLSGLTTQTQPKGTRSHSRRLSH 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0216 790 Gene3D Transferase(Phosphotransferase) domain 1 544 751 - -
Dere04g0216 790 MobiDBLite consensus disorder prediction 307 330 - -
Dere04g0216 790 Gene3D Phosphorylase Kinase; domain 1 436 543 - -
Dere04g0216 790 ProSiteProfiles Protein kinase domain profile. 468 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0216 790 SMART tyrkin_6 468 746 IPR020635 GO:0004713|GO:0006468
Dere04g0216 790 MobiDBLite consensus disorder prediction 262 283 - -
Dere04g0216 790 MobiDBLite consensus disorder prediction 766 790 - -
Dere04g0216 790 Pfam Protein tyrosine and serine/threonine kinase 474 702 IPR001245 GO:0004672|GO:0006468
Dere04g0216 790 MobiDBLite consensus disorder prediction 263 283 - -
Dere04g0216 790 FunFam Os07g0541700 protein 544 632 - -
Dere04g0216 790 MobiDBLite consensus disorder prediction 766 782 - -
Dere04g0216 790 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 543 - -
Dere04g0216 790 PANTHER OS01G0750732 PROTEIN 324 748 - -
Dere04g0216 790 MobiDBLite consensus disorder prediction 310 330 - -
Dere04g0216 790 SUPERFAMILY Protein kinase-like (PK-like) 448 746 IPR011009 -
Dere04g0216 790 ProSitePatterns Tyrosine protein kinases specific active-site signature. 589 601 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0216 Dere-ChrDere04 2262656 2270289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0216 456 747 Trihelix Transcription Factor Family AT5G38560 42.568 2.11e-71 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Dere04g0216 PK_Tyr_Ser-Thr 2e-42 CL0016