Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0197 ATGGGGAAAATGCAAAGATTGTTTGTCAAACAGAGTTATTGGATTGAAGCAAATGGGGTTGAATTGGGTAGATCCGTCATTCGCCGTTTCTCCAGGAATCTGAAGGAGGGTGTTTTACATATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCTCTTCCTGCTCCAGCAACAATAATAGCAATGACACGGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATAATTACTTTATGTGGTCACCTATTCTGCTGGCCGTGTCTTTACAAATGGCTTCACTTTCATTCACAGTCGCGAGAATGCCCTGTGTGCAAGGCCCTCATCCAGGAGGACAAGTTAGTTCCTCTATACGGGAGGGGAAAGACATCAACTGACCCGAGATCGAAGTCTGTTCCTGGCGTTAATATCCCACATCGTCCAGCTGGTCAGAGACCTGAAACTGCTCCTCCACCGGAACCAAATTATTTTCCTCAACATGGTTTTGGATTCATGGGTGGTTTGGGAGGGTTTTCCCCAATGGCAACAACAAGATTTGGGAATTTCACATTGTCAGCAGCATTCGGCGGTTTTATACCATCCTTATTTAACTTCCAATTGCACGGGTTTCATGATGGGACCATGTATGGTGGAGCAACTGGTTTTCCTTATGGATTTCCTAATTCGTTTCACGGCGGCCATGCTCATCGATATCCTCAGTATACAGGTCACGGTCAACAAGATTACTATCTGAAGAGGCTGCTTTTTTTTGTTGTTTTTTGCGTTGTTCTTGCATTTATTTGGCAATAG 810 0.4457 MGKMQRLFVKQSYWIEANGVELGRSVIRRFSRNLKEGVLHMASGFGESTSRSPPSSSCSSNNNSNDTGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIQEDKLVPLYGRGKTSTDPRSKSVPGVNIPHRPAGQRPETAPPPEPNYFPQHGFGFMGGLGGFSPMATTRFGNFTLSAAFGGFIPSLFNFQLHGFHDGTMYGGATGFPYGFPNSFHGGHAHRYPQYTGHGQQDYYLKRLLFFVVFCVVLAFIWQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0197 269 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Dere04g0197 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 127 IPR013083 -
Dere04g0197 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 54 265 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere04g0197 269 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 55 126 - -
Dere04g0197 269 CDD RING-HC_AtRMA-like 70 114 - -
Dere04g0197 269 SMART ring_2 72 112 IPR001841 -
Dere04g0197 269 SUPERFAMILY RING/U-box 68 125 - -
Dere04g0197 269 Pfam Zinc finger, C3HC4 type (RING finger) 70 117 - -
Dere04g0197 269 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Dere04g0197 269 MobiDBLite consensus disorder prediction 127 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0197 Dere-ChrDere04 1994685 1997043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0197 54 252 C3H Transcription Factor Family AT1G19310 65.366 6.39e-89 261