Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0183 ATGAGACTTGGAGCCCAGAGTTTAGGTGATCGTGGTGCCTCAAAGAATAGGCGATTTAGATTCTTGATAGGGATACAGGCCATGGCAGAGTTTGAGAATCCTTCCTCAATGGCAGTTTCTTCAGCTTCGGGAGAAGCTAGCTTTCCATCCTCTGGTCCCCAAAACACGCCTAATGAACTACCACCACCGAAGAAGAAGCGTAACCTCCCGGGAATGCCAGATCCAGATGCTGAGGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTCCAACGGGACCAGAACCTGCAGCTTCACCGCCGAGGCCACAACCTACCATGGAAACTCCGGCAGCGAACCAGCAAGGAAGTTCGTAAGAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCGTCGAGGGCTCTAGGTGATCTCACTGGGATTAAGAAGCATTTTTGTAGGAAACATGGCGAAAAGAAGTGGAAATGCGAGCGATGCTCCAAGAAATACGCGGTACAGTCTGATTGGAAGGCCCATATGAAAACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCTTATTCTCGAGGAAGGATAGCTTCATCACCCACAGGGCTTTTTGCGATGCCTTAGCGGAGGAGAGCGCCCGAGCCCAAACCCTAACTATTGGTGACGGCTCCGAGGGGAACTCGAATAGGAATGTTGCTATGGCTTCACCACCGCAACCTCCCCTTACTCCTTCTACGTCTGTGGTCTCTCCTGCTTTGTCCATTCAGAGCTCAGAAGTATCGGAAAACCCAATCAGGCTGTCGCCGCCGTCCTCGAACGTAACGTGTTTACCAACCGCAGTTGCAAACAACACTTCCTCCAGTTCTACTAGTGTTTTCGCCAGTATATTTGCATCCTCAAGTGTTGCTCCTTCTCAAACATCGACATTTTCGTCGTACTCTAATATTATGTCCAGCTTGGCTCGCTCGGACTGCCCAACTACTACCCCAACGATATCTGCCATAGTGCCCACATCTCTGTCTCTCTCCACATCACTTTACCTCTCCAATAATGATTCATCCCTATTCCCGGACCAGCACGACCCTCGGCACTACACTGCATCTCCACAGCCCGCATTGTCTGCCACTGCACTACTGCAAAAGGCAGCTCAAATGGGTGCTGCAGCTTCCAATGAATCTTTGCTTCGAGGTTTAGGCTTAGCAACAGCATCTTCCTCTGCACAAGATGATAGTACCTCATCACAATGGAATAGCCATGTAAAGACAGAAAATCTCTCGGTAACTGATGATGGTCTCGTGCTTGGAATTCCTTCTGCTGGGAATGCGGGTTACGCAGAAATGATGATGGGCTCGTCTTCGCCATTTGGGGGACAGCCCATGACTCGTGATCTTCTTGGCCTAAGCATAGGTGGTGCTGGTGGCGGGGCTAGCAGCAGGGGTGGTCTTTCTGCTTTACTCAGCTCTTTTGGAAGGAGATTCGATGTTGCAGATTCATCAACGGGAGGGAGGAGTGCGCCAGCAGAAGAGTAG 1566 0.5057 MRLGAQSLGDRGASKNRRFRFLIGIQAMAEFENPSSMAVSSASGEASFPSSGPQNTPNELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARAQTLTIGDGSEGNSNRNVAMASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPPSSNVTCLPTAVANNTSSSSTSVFASIFASSSVAPSQTSTFSSYSNIMSSLARSDCPTTTPTISAIVPTSLSLSTSLYLSNNDSSLFPDQHDPRHYTASPQPALSATALLQKAAQMGAAASNESLLRGLGLATASSSAQDDSTSSQWNSHVKTENLSVTDDGLVLGIPSAGNAGYAEMMMGSSSPFGGQPMTRDLLGLSIGGAGGGASSRGGLSALLSSFGRRFDVADSSTGGRSAPAEE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0183 521 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Dere04g0183 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Dere04g0183 521 MobiDBLite consensus disorder prediction 231 260 - -
Dere04g0183 521 MobiDBLite consensus disorder prediction 231 248 - -
Dere04g0183 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 487 IPR031140 -
Dere04g0183 521 FunFam protein indeterminate-domain 12-like 72 140 - -
Dere04g0183 521 Gene3D Classic Zinc Finger 147 227 - -
Dere04g0183 521 SMART c2h2final6 134 164 IPR013087 -
Dere04g0183 521 SMART c2h2final6 93 115 IPR013087 -
Dere04g0183 521 SMART c2h2final6 169 189 IPR013087 -
Dere04g0183 521 Pfam Zinc-finger of C2H2 type 93 115 - -
Dere04g0183 521 SUPERFAMILY beta-beta-alpha zinc fingers 92 190 IPR036236 -
Dere04g0183 521 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
Dere04g0183 521 MobiDBLite consensus disorder prediction 34 76 - -
Dere04g0183 521 Gene3D Classic Zinc Finger 73 139 - -
Dere04g0183 521 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0183 Dere-ChrDere04 1895711 1898617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0183 40 479 IDZ Gene Family AT5G66730 52.500 4.09e-145 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere04g0183 zf-C2H2 0.0053 CL0361