LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0144	ATGGCGTCGTCGAGTGGAAATTCCTGCGTGTCTACTAGGTTTCAGAGTTCTGGTTCAGAAAAGGAACTATTGCAGCTTCAGATGTTGCAGAGAAAGAGGAAGAGGATGCAATCGAATCGAGAATCGGCAAGGCGATCTCGGATGCGAAAGCAGAAGCACATGGATGATTTGGTGGCACAAGTGGGTCACCTCCGAAAGCACAATAGCGAAATCCTCACAAGCATAAACATGGCGACACAAAAGTATCTGCATGTGGAGGCAGAGAATTCCATTTTAAGAGCCCAGATTGCAGAACTTAGCCAAAGACTACAATCTCTGAAGCATATCCTCAACCTCATCAACGCAACAACTGAGACACAGGGTTTCATGAATCCCATGAACATGTCATTATATCTCAACCAACCCACTATTATGGCTTCAAAGAGCATTTTCCAGTGGTGA	441	0.4512	MASSSGNSCVSTRFQSSGSEKELLQLQMLQRKRKRMQSNRESARRSRMRKQKHMDDLVAQVGHLRKHNSEILTSINMATQKYLHVEAENSILRAQIAELSQRLQSLKHILNLINATTETQGFMNPMNMSLYLNQPTIMASKSIFQW	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0144	146	CDD	bZIP_plant_GBF1	32	82	IPR045314	GO:0003700\|GO:0006355
	Dere04g0144	146	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	34	49	IPR004827	GO:0003700\|GO:0006355
	Dere04g0144	146	Coils	Coil	19	46	-	-
	Dere04g0144	146	PANTHER	BZIP TRANSCRIPTION FACTOR 44	8	141	-	-
	Dere04g0144	146	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	29	92	IPR004827	GO:0003700\|GO:0006355
	Dere04g0144	146	Pfam	bZIP transcription factor	31	76	IPR004827	GO:0003700\|GO:0006355
	Dere04g0144	146	MobiDBLite	consensus disorder prediction	1	24	-	-
	Dere04g0144	146	MobiDBLite	consensus disorder prediction	1	53	-	-
	Dere04g0144	146	Coils	Coil	82	116	-	-
	Dere04g0144	146	SUPERFAMILY	Leucine zipper domain	31	83	IPR046347	GO:0003700\|GO:0006355
	Dere04g0144	146	Gene3D	-	29	111	-	-
	Dere04g0144	146	SMART	brlzneu	27	91	IPR004827	GO:0003700\|GO:0006355
	Dere04g0144	146	FunFam	BZIP transcription factor	29	80	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0144	Dere-ChrDere04	1503241	1503681	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g0144	28	146	bZIP Transcription Factor Family	AT4G34590	51.095	1.28e-39	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere04g0144		bZIP_1	4.5e-10	CL0018