Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0129 ATGTATTCATCTGCATCTAAAGTTGTGGACTTCTATCGTGATACTCTGTTTTGCGTGTCGTTGATGGTTTGTACTTTTTTGGTTTTGAATTTAAAAGGTGAGAAGGAAGAAGTAGATGGCGTAATTGGGAAGAAAGGAAAGTTTGGTCTGACTCGTCATGTTGGAACGGTGAGCGAAGGTGATAAATTAAGGAGTCACGTCTACTCATTGGCTCGCGTTCTTCCAATGGGCCGTCACTCACTATTGGCTCTCTTGCTCTTCTCCCTCTCATCGGCGGCGGTCGCAGCGGCCCAGGGCATCGACGATGAAGATGACCTTGTGATCCGGCAAGTCGTGCCGGACGGCGACGATCACTTGCTCAACGCCGAACACCATTTCTCCACATTCAAGGCCAAGTTTGGCAAGACCTACGCAACTAGAGAAGAGCACGACTATCGCTTCGGTGTCTTCAAGGCTAACTTGCGCCGGGTTAAGTTACATAAGAAGCTCGATCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTTACTCCCTCGGAATTTCGCCGGCAGTTCCTCGGCCTCAAGCCTCTTCGTCTTCCCGCCCATGCTCAACATGCTCCGATCCTCCCTACTAACGATCTTCCTACGGACTTCGATTGGCGTGATCATGGAGCCGTCACTGCCGTCAAGGACCAGGGTGCATGTGGATCATGCTGGTCCTTTAGCACCACAGGGGCGTTGGAAGGAGCTCATTTCATAGAGACGGGTGAGCTAGTGAGCCTTAGCGAGCAACAGCTTATGGATTGCGACCATGAGTGTGATCCAGAAGAACATGGAGCATGTGACGCAGGCTGTAACGGTGGATTGATGACCTCTGCATTTGAATACACGCTCAAGGCCGGTGGACTAGAGCGAGAAGAGGACTATCCTTACACCGGAAATGATCGTGGTACCTGCAAATTTGACAAAAGCAAAATTGCTGCTTCTGTGGCTAATTACAGTGTGATTTCCATCGACGAAGATCAAATTGCTGCAAATCTGGTGAAGCATGGCCCTCTTGCAGTTGGTATCAATGCAGTTTTTATGCAGACATACATCGGTGGCGTTTCATGCCCATATATATGCTCGAAGCATTTGGATCATGGGGTTCTTCTGGTGGGCTATGGCTCTGCTGCTTATGCTCCCATTCGGTTCAAGGAAAAACCTTACTGGATCATAAAGAATTCGTGGGGAGCGAACTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCATAACGTGTGTGGAGTGGATTCCATGGTCTCAAGCGTAGCTGCGTTGCCTACTTCTACCCAATAA 1326 0.4962 MYSSASKVVDFYRDTLFCVSLMVCTFLVLNLKGEKEEVDGVIGKKGKFGLTRHVGTVSEGDKLRSHVYSLARVLPMGRHSLLALLLFSLSSAAVAAAQGIDDEDDLVIRQVVPDGDDHLLNAEHHFSTFKAKFGKTYATREEHDYRFGVFKANLRRVKLHKKLDPSAVHGVTKFSDLTPSEFRRQFLGLKPLRLPAHAQHAPILPTNDLPTDFDWRDHGAVTAVKDQGACGSCWSFSTTGALEGAHFIETGELVSLSEQQLMDCDHECDPEEHGACDAGCNGGLMTSAFEYTLKAGGLEREEDYPYTGNDRGTCKFDKSKIAASVANYSVISIDEDQIAANLVKHGPLAVGINAVFMQTYIGGVSCPYICSKHLDHGVLLVGYGSAAYAPIRFKEKPYWIIKNSWGANWGENGYYKICRGHNVCGVDSMVSSVAALPTSTQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0129 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 374 384 IPR025660 -
Dere04g0129 441 PRINTS Papain cysteine protease (C1) family signature 398 404 IPR000668 GO:0006508|GO:0008234
Dere04g0129 441 PRINTS Papain cysteine protease (C1) family signature 376 386 IPR000668 GO:0006508|GO:0008234
Dere04g0129 441 PRINTS Papain cysteine protease (C1) family signature 227 242 IPR000668 GO:0006508|GO:0008234
Dere04g0129 441 Pfam Cathepsin propeptide inhibitor domain (I29) 126 182 IPR013201 -
Dere04g0129 441 Gene3D Cysteine proteinases 103 434 - -
Dere04g0129 441 SUPERFAMILY Cysteine proteinases 123 434 IPR038765 -
Dere04g0129 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 227 238 IPR000169 -
Dere04g0129 441 SMART pept_c1 209 434 IPR000668 GO:0006508|GO:0008234
Dere04g0129 441 SMART Inhibitor_I29_2 126 182 IPR013201 -
Dere04g0129 441 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 122 427 IPR013128 GO:0008234
Dere04g0129 441 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 398 417 IPR025661 -
Dere04g0129 441 CDD Peptidase_C1A 210 433 IPR039417 -
Dere04g0129 441 Pfam Papain family cysteine protease 209 432 IPR000668 GO:0006508|GO:0008234
Dere04g0129 441 FunFam Cysteine protease RD19A 106 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0129 Dere-ChrDere04 1338089 1342159 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2762 05 38312513 38314291 Dere04g0129 04 1338089 1342159 CCT
Dere04g0129 04 1338089 1342159 Dere04g0129 04 1338089 1342159 ECH