Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0126 ATGGCTGGGTTTTTCTCTCTAGGTGGAAAAGAAGGCCTACAAAAGAAGCAAGAAAAAGAAAAAGCAGATAACAGCAATAGCAGTAGCCTATTCTTGTTGAGAGAGGAGGAGATCTACAGCAACAAGAGTTTCGAGATATGGACACAGTCTTATCACCCAGACCAACATTTGAGCAACTGTTTCTCTCTTGGGGTGGGTCCTAGTCGGGGAAACTTGTGTGATGAGTCTACTAGATTCGGATTGACGGTGACGAGGTCCGGGGCTCTAGGAGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTTCGGCAGCCAAACGCCGCGAGCGACAGCATCACCAGAACCAAAACCAACAACAACAATTTCGAGGCGATAGGTCAAATCGGCACAGAGAATTTCAAGGTGCAGGCGCACTTGCCTGCATTCCTTCACCTATCACCACCACAGGGTTGGAACTGGGGCAATTCCCTCCCGAAGTGAACTCTCCAGCAATGTTTCAGTGTGTGAAAGTTAACGCAATGGACACTCCGGACGAGCAATATGCATATCAAACGGCCGTAAACATCGGAGGGCATGTTTTCAAAGGAATTCTCTACGATCAAGGCCCTGACGCTCCTTATAACACCGGCGGCGAGAGCTCCTCCGTTGTAGCTGATGCTCAACAAATTAATCTCGTAACTGCCTCAACTACCGCAACCAACAGCGCCAACCCGTATGATCCTTCACTCTACCCCGTTCCGCTCAACACCTTCATGGCTGGTAAGCAATTCTTCCCACCCCCAAGATCCTAA 879 0.4972 MAGFFSLGGKEGLQKKQEKEKADNSNSSSLFLLREEEIYSNKSFEIWTQSYHPDQHLSNCFSLGVGPSRGNLCDESTRFGLTVTRSGALGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVSAAKRRERQHHQNQNQQQQFRGDRSNRHREFQGAGALACIPSPITTTGLELGQFPPEVNSPAMFQCVKVNAMDTPDEQYAYQTAVNIGGHVFKGILYDQGPDAPYNTGGESSSVVADAQQINLVTASTTATNSANPYDPSLYPVPLNTFMAGKQFFPPPRS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0126 292 NCBIfam putative zinc finger domain, LRP1 type 94 136 IPR006510 -
Dere04g0126 292 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 265 IPR007818 GO:0003700|GO:0006355
Dere04g0126 292 MobiDBLite consensus disorder prediction 1 22 - -
Dere04g0126 292 Pfam Domain of unknown function (DUF702) 92 233 - -
Dere04g0126 292 NCBIfam LRP1 C-terminal domain 184 232 IPR006511 -
Dere04g0126 292 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0126 Dere-ChrDere04 1315459 1316819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0126 1 292 C2H2 Transcription Factor Family AT1G75520 43.143 1.17e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere04g0126 DUF702 2.7e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2765 05 38337622 38339002 Dere04g0126 04 1315459 1316819 CCT
Dere04g0126 04 1315459 1316819 Dere04g0126 04 1315459 1316819 ECH