Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0125 ATGGCTCGTGGTAAGATCCAGATCAAGAGGATTGAGAATACCACCAACCGCCAGGTTACCTACTCCAAAAGACGAAACGGCCTCATGAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCCAAGGTTTCCATTATTATGTTCTCCAGCAGTACCGGCAAACTCCACGAGTACATTAGCCCCTCCATCACAACAAAGGAGTTTTTCGATCAGTACCAAAAGACCGTAGGCATTGATCTATGGAGCTCCCACTATGAGAATATGCAAGAGAACTTGAAGAAGCTGAAAGAGGTGAACAAGAATCTTCGCAGAGAGATTAGGCAGAGGATGGGGGACTGTTTGAACGATCTGAACATGGAAGACCTGAAGCTACTTGAGGAAGAAATGGAACAGGCCACCAAGGTCATCCGTGAGCGCAAGTATAAGGTGATTACAAACCAGATCGACACTCAAAGGAAGAAGTACAATAACGAGAAAGAAGTACACGGCAGACTTTTACGTGACTTTGAGGCAAGAGCCGAAGATCCACGCTTTGGATTAGTAGAAAATGGAGTGGATTATGATACTGTGATTGGATTCTCCAATCTAGGTCCTCGCATGTTTGCATTAAGCCTGCAGCCTAGTCATCCTAATCCCCACGCGGGAGCGGCAGGGTCAGATCTCACCACTTATCCTTTACTTTTCTAG 687 0.4614 MARGKIQIKRIENTTNRQVTYSKRRNGLMKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSITTKEFFDQYQKTVGIDLWSSHYENMQENLKKLKEVNKNLRREIRQRMGDCLNDLNMEDLKLLEEEMEQATKVIRERKYKVITNQIDTQRKKYNNEKEVHGRLLRDFEARAEDPRFGLVENGVDYDTVIGFSNLGPRMFALSLQPSHPNPHAGAAGSDLTTYPLLF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0125 228 CDD MADS_MEF2_like 2 81 IPR033896 GO:0000977|GO:0045944
Dere04g0125 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Dere04g0125 228 Coils Coil 78 112 - -
Dere04g0125 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g0125 228 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Dere04g0125 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Dere04g0125 228 ProSiteProfiles MADS-box domain profile. 1 62 IPR002100 GO:0003677|GO:0046983
Dere04g0125 228 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere04g0125 228 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0125 Dere-ChrDere04 1300838 1303193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0125 1 227 MADS-box Gene Family AT3G54340 57.082 1.38e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere04g0125 K-box 5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0125 04 1300838 1303193 Dere04g0125 04 1300838 1303193 ECH