Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0121 ATGGCAACAACGGCTATTTTTTTATGCGTCTTCCTCGCATTGGCGTCCTTCTTGTCATGTGTCCTGTCCGTGTCGGAGATCGGAGCCTTGATGGCCTTCAAGCTCGGCCTCCACGACCCTCTTGGATCCTTGGACGGCTGGGATCCTTCCACTTCTTCCGCTCCTTGTGACTGGCGTGGCATTTCCTGTTATAACAACCGAGTTCGCGAGCTTCGCTTGCCTCGCCTTCAACTAGCCGGTCCACTCCCTGATTCCCTCTCCGACTTGGTACAACTTCGCAAGTTGAGCCTCCATTCTAACAACTTCAATGGCTCCATTCCTCCTTCTCTCTCTCAATGTCTGCTTCTGCGTTCCGTTTACCTTCATAATAACTCATTTTCCGGCAAGCTCCCGCCGGCTCTTCTTAACCTCACCAACCTTCAAGTTCTCAACGTCGCTCGCAACCTTCTCTCTGGCAGGATCCCCGACGGTTTATCATCCTCTCTCCGGTTCCTCGATTTATCGTCGAACGCTTTCTCCGGCGATATTCCGGCGAATTTTTCATCAGAATCTCAGCTACAGCTCATCAACTTATCATACAATCGGTTCTCCGGTGGAATACCTGTCACTGTTGGAGTTTTGGGACAGCTTGAGTATCTTTGGCTAGACTCCAACCAGCTGTATGGGACTCTGCCTTCGGCTCTAGCTAACTGCTCTTCTCTTGTGCATCTAAGCGCGGAAAACAATGCGCTTACTGGTTTGATTCCGGCGACCATGGGCACAATGCCGAACCTTCAAGTGCTGTCGTTGTCGTCGAATCAACTCTCGGGATCGGTCCCCACTTCTCTTTTTTGCAATGTCCACTTGGCCAATTCTTCTTCTCTGAGAATTGTTCAATTAGGCTTTAATACGCTCACGGGCATTTCCAAGCCGCCAAATGCGAGGTGTGTTAATGTTTTGGAGATTTTAGAGCTTAAAGGGAATCATATTCGCACAGCGTTTCCCTCCTGGTTGACTAATGCGACGTCGTTAAGAGCTGTTGATCTTTCTGGAAACTACTTTTCTGGTATTTTGCCGGCTGATATTGGGAATTTATTGAGGCTAGAGGAGCTGAGGGTGGCAAACAATTTATTATCTGGTGGAGTCCCTCGTGAAATTGTGAAATGCATTTTGTTACAGGTTCTTGATCTTCAAGGGAACCGGTTCTCTGGCTCCATTCCTTCATTTCTTGGCCAACTGAGGAACCTGAAGATGTTATCTCTTGGCGATAGCCTGTTTTCGGGTTCTATACCCCCGAGTCTTGGAACACTTTCTGAGCTCGAGACGTTGAATTTGAGCAATAACAAACTATCGGGTGTTATTCCCCAAGAATTAATGCAATTGGGCAACATGAGTGCTTTGAATCTCAGTAATAATAGATTTTCAGGCCAACTTTCGTCTGCCATCGGGGACTTGACAGCTTTACAGGTTCTGAATTTGAGTCATTGTGGGTTTTCAGGACGGATTCCTGCTAGTGTTGGTAATTTAATGAAACTAACGGTGCTTGATCTAAGTAGGCAAAACCTTTCAGGTGACTTGCCAATTGAGCTTTATGGATTACCAAGCCTGCAGGTTGTTGCTTTTCAAGAGAACCACTTATCCGGAGCTGTCCCTGAAGGTTTGAGCAGTTTAGTTAGTCTACAGTATCTTAATATCAGCTCCAATGTCTTTGTTGGTGACATTCCAGCAACTTATGGATTCCTTCGGTCGTTAAATGTACTGTCCGTATCTCACAATCGTATTTCTGGTAGAATACCGTCAGAGATTGGTAACTGTTCTCAACTTGAAGTGCTCGAGGTTCGTTCAAATCGTTTGCATGCTAGCATTCCAGATGATATGTACCGCCTAAATCGTTTAAGGGTCCTTGATTTAGGAGATAACAAGTTAACAGGAGATATTCCGGAAAAATTATCCGAATGTTCTGCTTTGACTTCACTCTTCTTGGATTCTAATCACTTAACGGGTCAAATACCAGAATCCTTGTCAAATTTATCAAACCTGACTGCGTTGAATCTCTCTTCAAATCAATTGAGCGGAGAAATTCCGGCCAGTCTGTCACGCATTCCTGGTTTGAAGTATTTAAATCTATCTAGAAATAATCTTGAGGGTGAGATTCCAGGAATGCTGGGTTCCCGATTTAATGATCCTTCTATATTTGCAATGAATCAGAGGTTATGCGGAAACCCACTGCATAGAGAATGTGCTAACGTAAGAAGGCGAAAGAGGAAGAGGCTAATAATATTTATAGGTGTGGCTCTGGCTGGACTATGCTTTTTGGGACTATGCTGCTGTGGCTGCATTTACAGCCTCTTACGGTGGCGCAAGAAGTTAAGAGATGGGGTAACAGGGGAGAAGAAGAGGAGCCCTGTTAATGCAAGCTCAGGAGCAGAGAGAGGTCGAGGGAGTGGGGAAAATGGAGGGCCAAAACTAGTAATGTTCAACAACAAGATTACTTATGCCGAGACATTGGAAGCAACAAGACAATTTGATGAGGAGAATGTATTGAGCAGAGGAAGATATGGTCTTGTGTTCAAAGCCTCGTACCAAGACGGAATGGTTCTCTCAATCCGTCGTCTGCCTGATGGATTCACTGAAGAGGGAACCTTCCGCAAAGAAGCAGAATCATTAGGAAAAGTAAAGCATCGAAATTTAACGGTCCTGCGTGGCTATTACGCAGGACCACCAGACGTGAGGCTCCTTGTCTATGACTACATGCCCAATGGAAACCTAGGGACTCTCCTTCAAGAGGCATCTCAGCAAGATGGCCATGTACTGAACTGGCCTATGCGTCATCTCATCGCACTGGGCATTGCTCGCGGGCTTGCTTTCCTACATTCAGTCTCAATAGTTCATGGGGATGTGAAGCCTCAAAATGTTCTGTTTGATGCTGATTTTGAAGCCCATTTGTCAGAATTTGGGTTAGACCGAATAATAATTGCAACCCCAGCAGAAGCATCGTCATCGTCCACACCCATAGGATCACTGGGTTATGTATCACCGGAAGCAGCATTAACTGGGCAAGCGACCAAGGAGGCTGACGTTTACAGCTTTGGGATAGTATTGTTAGAGATACTAACAGGAAGAAAACCTGTGATGTTCACGCAAGACGAAGACATAGTGAAATGGGTGAAAAGACAATTGCAAAGAGGACAAATATCGGAATTGCTGGAGCCTGGTTTGCTTGAGCTAGACCCAGAGTCATCAGAATGGGAAGAGTTCTTGTTGGGGATTAAAGTTGCTCTACTATGCACAGCTCCTGATCCTCTTGATCGACCATCCATGACTGACATTGTTTTCATGCTCGAAGGTTGCCGGGTCGGGCCGGAGATTCCATCATCAGCCGATCCCACTACGCTACCTTCCCCTGCATGA 3390 0.4599 MATTAIFLCVFLALASFLSCVLSVSEIGALMAFKLGLHDPLGSLDGWDPSTSSAPCDWRGISCYNNRVRELRLPRLQLAGPLPDSLSDLVQLRKLSLHSNNFNGSIPPSLSQCLLLRSVYLHNNSFSGKLPPALLNLTNLQVLNVARNLLSGRIPDGLSSSLRFLDLSSNAFSGDIPANFSSESQLQLINLSYNRFSGGIPVTVGVLGQLEYLWLDSNQLYGTLPSALANCSSLVHLSAENNALTGLIPATMGTMPNLQVLSLSSNQLSGSVPTSLFCNVHLANSSSLRIVQLGFNTLTGISKPPNARCVNVLEILELKGNHIRTAFPSWLTNATSLRAVDLSGNYFSGILPADIGNLLRLEELRVANNLLSGGVPREIVKCILLQVLDLQGNRFSGSIPSFLGQLRNLKMLSLGDSLFSGSIPPSLGTLSELETLNLSNNKLSGVIPQELMQLGNMSALNLSNNRFSGQLSSAIGDLTALQVLNLSHCGFSGRIPASVGNLMKLTVLDLSRQNLSGDLPIELYGLPSLQVVAFQENHLSGAVPEGLSSLVSLQYLNISSNVFVGDIPATYGFLRSLNVLSVSHNRISGRIPSEIGNCSQLEVLEVRSNRLHASIPDDMYRLNRLRVLDLGDNKLTGDIPEKLSECSALTSLFLDSNHLTGQIPESLSNLSNLTALNLSSNQLSGEIPASLSRIPGLKYLNLSRNNLEGEIPGMLGSRFNDPSIFAMNQRLCGNPLHRECANVRRRKRKRLIIFIGVALAGLCFLGLCCCGCIYSLLRWRKKLRDGVTGEKKRSPVNASSGAERGRGSGENGGPKLVMFNNKITYAETLEATRQFDEENVLSRGRYGLVFKASYQDGMVLSIRRLPDGFTEEGTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVSIVHGDVKPQNVLFDADFEAHLSEFGLDRIIIATPAEASSSSTPIGSLGYVSPEAALTGQATKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSMTDIVFMLEGCRVGPEIPSSADPTTLPSPA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0121 1129 SUPERFAMILY L domain-like 282 540 - -
Dere04g0121 1129 Pfam Leucine rich repeat 407 467 IPR001611 GO:0005515
Dere04g0121 1129 Pfam Leucine rich repeat 504 561 IPR001611 GO:0005515
Dere04g0121 1129 Pfam Leucine rich repeat 575 635 IPR001611 GO:0005515
Dere04g0121 1129 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Dere04g0121 1129 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Dere04g0121 1129 Gene3D Ribonuclease Inhibitor 281 471 IPR032675 -
Dere04g0121 1129 FunFam Leucine-rich repeat receptor protein kinase EMS1 200 304 - -
Dere04g0121 1129 SUPERFAMILY L domain-like 23 302 - -
Dere04g0121 1129 SMART LRR_typ_2 526 550 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 358 382 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 207 231 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 622 646 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 574 598 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 670 694 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 478 502 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 255 279 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 89 113 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 430 454 IPR003591 -
Dere04g0121 1129 SMART LRR_typ_2 137 161 IPR003591 -
Dere04g0121 1129 ProSiteProfiles Leucine-rich repeat profile. 432 453 IPR001611 GO:0005515
Dere04g0121 1129 Gene3D Transferase(Phosphotransferase) domain 1 911 1115 - -
Dere04g0121 1129 FunFam Putative LRR receptor-like serine/threonine-protein kinase 798 910 - -
Dere04g0121 1129 Gene3D Phosphorylase Kinase; domain 1 810 910 - -
Dere04g0121 1129 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515
Dere04g0121 1129 ProSiteProfiles Leucine-rich repeat profile. 257 279 IPR001611 GO:0005515
Dere04g0121 1129 ProSiteProfiles Protein kinase domain profile. 835 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0121 1129 Gene3D Ribonuclease Inhibitor 472 749 IPR032675 -
Dere04g0121 1129 Gene3D Ribonuclease Inhibitor 139 204 IPR032675 -
Dere04g0121 1129 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Dere04g0121 1129 Gene3D Ribonuclease Inhibitor 205 280 IPR032675 -
Dere04g0121 1129 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 451 744 - -
Dere04g0121 1129 Pfam Protein tyrosine and serine/threonine kinase 838 1054 IPR001245 GO:0004672|GO:0006468
Dere04g0121 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 182 - -
Dere04g0121 1129 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Dere04g0121 1129 PRINTS Leucine-rich repeat signature 433 446 - -
Dere04g0121 1129 PRINTS Leucine-rich repeat signature 670 683 - -
Dere04g0121 1129 SUPERFAMILY RNI-like 460 721 - -
Dere04g0121 1129 FunFam Piriformospora indica-insensitive protein 2 351 445 - -
Dere04g0121 1129 SUPERFAMILY Protein kinase-like (PK-like) 814 1118 IPR011009 -
Dere04g0121 1129 SMART serkin_6 835 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere04g0121 1129 MobiDBLite consensus disorder prediction 790 815 - -
Dere04g0121 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Dere04g0121 1129 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 385 1109 - -
Dere04g0121 1129 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 911 1115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0121 Dere-ChrDere04 1256610 1259999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0121 1 1129 Receptor kinase-like Gene Family AT1G75640 65.053 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Dere04g0121 PK_Tyr_Ser-Thr 3.4e-32 CL0016