Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0113 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAGGCTGATCAATATAAATCAGCTCAGGGGCAGTGGTTGATGCAACATCAACCTTCCATGAAGCAGATTATGGCACTTATGGCTGAGAGAGATGCAGCCATTCAAGACAGAGCTCTGGCCCTTTCTGAAAAAAAGGCAGCTCTTGCAGAGCGTGATATGGCATTCCTGCAACGAGACACTGCAATTGCAGAACGGAATAATGCCATAATGGAACGAGATAATGCAATTGCTACCCTTCAGTATCGAGAAAACTCCTTAAACAATGGTAGTATGTCTTCATGTCCTCCAGGATGCCAAATCTCCCGAGGTGTAAAGCACATGCATCATCCTCAGCAACAGGTCCAACATTTACCTCATATGGGTGATACTTCTTACAGTACACGGGAAATGCACACTGGTGATGACCTCTCAGCAGCGCCTGTACCTCCTGAAGCTGGGAAGTCACGGCGGGCCAAGCGACCAAAGGATGGTAAGTCAATTTCACCGAATAAGAAAACACCAAAAGCTGCAAAAAAGCTCAAGAGGGAGAGTGAAGACCTGAATAAGATGATGCTTGGCAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGATCTTAACAAGCAGTTAGTGGTGTCAAAGGCAGATTGGAAAGGTCAGGACTTGGGGTTGAACCAAGTAGCATACGATGAATCAACCATGCCAGCACCAGTATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGGAATGGGGGTTGGCAGTCTGCTTGTTGCACAACAACTCTATCAATGTATCCACTTCCAGCTGTACCCAACAAGAGGCATGCCCGGGTTGGTGGTCGAAAGATGAGTGGAGGTGCTTTCAATAAGCTGCTTAGCAGGCTTGCAGCAGAAGGCCATGATCTGACAAACCCAGTTGACCTCAAGGACCATTGGGCCAAACATGGTACAAACCGCTATATCACAATCAAGTAG 1014 0.4724 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMALMAERDAAIQDRALALSEKKAALAERDMAFLQRDTAIAERNNAIMERDNAIATLQYRENSLNNGSMSSCPPGCQISRGVKHMHHPQQQVQHLPHMGDTSYSTREMHTGDDLSAAPVPPEAGKSRRAKRPKDGKSISPNKKTPKAAKKLKRESEDLNKMMLGKAHEWKSGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLTNPVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0113 337 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g0113 337 SMART GAGA_bind_2 1 337 IPR010409 -
Dere04g0113 337 MobiDBLite consensus disorder prediction 1 15 - -
Dere04g0113 337 MobiDBLite consensus disorder prediction 128 143 - -
Dere04g0113 337 MobiDBLite consensus disorder prediction 158 174 - -
Dere04g0113 337 Coils Coil 51 71 - -
Dere04g0113 337 PANTHER - 1 337 IPR010409 -
Dere04g0113 337 MobiDBLite consensus disorder prediction 118 189 - -
Dere04g0113 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0113 Dere-ChrDere04 1190196 1191342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0113 65 337 BBR or BPC Transcription factor family AT5G42520 63.823 2.67e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Dere04g0113 GAGA_bind 5.8e-106 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0113 04 1190196 1191342 Dere04g0113 04 1190196 1191342 ECH