Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0091 ATGTCGAGTTCCGGTGAGGATCAAAGCCGTCGGCATCAGCTCTCTCAATTCCAATTCCACCGACTGCACACTCATTCTCAATTCCATCACCATAGCACTTTCACTCCCTTTTCTCCCACTCCTCGGCCTTTTTCCTTTCCTTCTTCCACCCAATTCACCGCTGACGATGCTCATTCTGCTTTTGCTAAGCTAGCCGTGAGTTCCCTCTGTTTTCTTCTTCTTCTTTATTTGAGTCAAAGACTTGAAGTTGATAATTCCAAGCCTCAGACGAATAGCGTTGAAGTAGCTCGAAGACAAAGCGATGTAGTTAATTTTTCTTCACTTAAAAGTGAGCCTGCTAAGAGTGGAAAACATCACGGTAAATCAAAAGTTCCAAGAAATGTGAAATCAGGGATTCAAAGATCAAATGCTGATTCTACTAATTCGACTCCAGTTAACAATTGTCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGTTTAATTCAGGAGGCTAAGGATGGTACCCTGGATCTAAATAAAACTGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGATATTACGAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACTTCAAAGAACCATATACGGTGGAAGGGATATGATGGACTGGGGCCAGGCGAGCTGGATGATCAAGTTACTAGATTAAAGGCTGAAGTGGAAAGCCTATATTCAGAGGAATGCCAACTTGATGATATTATAAGGAAAAAGCAAGAGCTCCTAAGAACTTTGGAGGAAAAAGATAACTATCAAAAGTACCTTTTTTTGACCGAGGAAGATATTCTTAGTCTTCCATGCTTCCAGAATCACACACTTATTGCAATCAAGGCGCCACAAGCTAGTTTTATTGAAATTCCTGATCCTGATGAGGATATTGGTTTTCGGCAAAGACAGTACAAAATGATTGTTAGAAGCACCACTGGACCAATAGATTTGTATCTTTTAAGCAAACACAGCGACAATTATGAGGATGTTGGTGTCAAGCAGACTACATTAATAGATCCTGCATGGAACAGAAGCCAGTGTGGATTGAAGAGTGCGGGATTACATTTCGAAAGCCATGATGCTGAGAACAATCCTTCTCGAAGTCTTGGTTCGCTGGGCTTGGATCCACCTGGCATTCAGAAAATTACTCCCACCGATTTTGACATTGAAAATGACTATTGGTTCCAATCAGATGATGGAGTGGCCCTAACAGATTTGTGGGCAACTGAGCAGTTAGTTCACATTGATGAGGTCCTTCAAGACGATTATTCCAATGGGAGTGTGGGATTCACTCAAACCCCAGCATCACCGTCAGATGTGGTCAATATGTAA 1359 0.4121 MSSSGEDQSRRHQLSQFQFHRLHTHSQFHHHSTFTPFSPTPRPFSFPSSTQFTADDAHSAFAKLAVSSLCFLLLLYLSQRLEVDNSKPQTNSVEVARRQSDVVNFSSLKSEPAKSGKHHGKSKVPRNVKSGIQRSNADSTNSTPVNNCRYDSSLGLLTKKFVSLIQEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYDGLGPGELDDQVTRLKAEVESLYSEECQLDDIIRKKQELLRTLEEKDNYQKYLFLTEEDILSLPCFQNHTLIAIKAPQASFIEIPDPDEDIGFRQRQYKMIVRSTTGPIDLYLLSKHSDNYEDVGVKQTTLIDPAWNRSQCGLKSAGLHFESHDAENNPSRSLGSLGLDPPGIQKITPTDFDIENDYWFQSDDGVALTDLWATEQLVHIDEVLQDDYSNGSVGFTQTPASPSDVVNM 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0091 452 FunFam E2F transcription factor 1 143 216 - -
Dere04g0091 452 Gene3D - 143 216 IPR036388 -
Dere04g0091 452 CDD E2F_DD 225 332 IPR032198 GO:0046983
Dere04g0091 452 SMART E2F_TDP_2 149 214 IPR003316 GO:0005667|GO:0006355
Dere04g0091 452 SUPERFAMILY E2F-DP heterodimerization region 225 331 IPR037241 -
Dere04g0091 452 MobiDBLite consensus disorder prediction 106 144 - -
Dere04g0091 452 Pfam E2F transcription factor CC-MB domain 230 329 IPR032198 GO:0046983
Dere04g0091 452 Gene3D - 221 332 - -
Dere04g0091 452 MobiDBLite consensus disorder prediction 128 144 - -
Dere04g0091 452 SUPERFAMILY "Winged helix" DNA-binding domain 149 212 IPR036390 -
Dere04g0091 452 PANTHER TRANSCRIPTION FACTOR E2F 100 421 IPR015633 GO:0000978|GO:0006357
Dere04g0091 452 Pfam E2F/DP family winged-helix DNA-binding domain 151 214 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0091 Dere-ChrDere04 900701 904952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0091 2 417 E2F-DP Transcription Factor Family AT1G47870 45.581 4.00e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dere04g0091 E2F_CC-MB 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0091 04 900701 904952 Dere04g0091 04 900701 904952 ECH