Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0079 ATGAGCCAGAAGGATATTGTTAGATTCTTGACTACAACTATTGATAGCTTCATTCAAGATCGGTTAATCAACAAAGAAAGAAGGATCCGACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGAATTGATAAAGACAGCGAGGTCCAGTACTCTGATCAAGCAGTATTAGCAAATCTAGATTGGGGTATAGAAGCCCTTGAAGAAGCTATCAATACCTTTAATATGGAGACTAAGATTGCCCGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCCCTGTTGAATCCCAATCGAAAAACTGCTGGAGTGCCCAATTTCTACCTCTCAGCTTGGGCCCACCTCAATCTATCCTACCTGTGGAAGTTGCGGAACAATATTCAAAATTCAATTTTCCATGTTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCACGAATTGATTTTGCTCCTGAGCTTTGGAAGGATCTGTTTCTTCCACACATGAGCTCCATTGTAGGGTGGTATTCAGAGGATAGGCACAGGCTTATGATGGATGTCATACCTGATTCTTCCCATTTGTCCTTTACGGCTGATTTTGATCAATTCTTCAATGAGTCTCTGATATTTACTATGAGGCCACATCAATTAGAAAAACTGCAGAAGTTGGAGCAGCTTTATGGAGAGTCATTGGATGAAAACACGAGGCTTTATGCAAAGTACTATAAAGATTGCATCAACTATGATTCAACCTCCAGCAAGAAGGTTCCAATGTTGCCAATTGCTGAGCCACCAATGACTCCTTTGCATGAGTTGAGCTGCTCCGTTCCTGATTATGTAAAATTTGGCCCTATATTGCCCAAGAGTGCTGGGTTTTCTCCTGTTCTGAAACCTAAAGATGGTGCGAATGAAACTATCAGAGTGAACGTAACTTCCGGCCATTCAAAAAAGGTGGAGAAGTCATCATTTATATGGGGTGCTAAGGATATGCAGGAGAGCATCACTGAAGAGTACGAAGGTGATTCAGATTATGACCTCAATGATTCATTCGTGGATTCAGATAGTAAAACTCAGACTGTCGTGTCTCCTAGAATTCACATGACCAAGAATGAGGATATTGAGCCAAAAGGACATCAATCAAACCAGAAGAGTCAAATACATTCTCCAACAACTTTCTCTCCCCTGGATTCTCCAAGAGCTCCTCAGAGTAATTCTTCTTCAATTATTGACACAAACACTAAAGGAGTACCCAAGTCTTTGCGCTTATTGTCTAGGCGTTTTTCGGATTCAACTATTTCCAACTCGTCACCATTATCTCCACACATGAGTACTGATCACAGCATTAGCTCAGAAGACTCTGAGAATGAAGTGATGGGCGTGAAGAGCAGTCAGAGGAAAAACCATGAAGTAGCTAAGATTATCAATCGTGGCAAAGAGAGTATCCTCTCATTCAATGACAATTCCCTTTATGAGAGCGATGAGGGACATAGCAGCAGTATTTCATTGCCGAAATCAGAGAAGCTTACCGTTCGATCAAGACCACCCAAAGATTTTGTTTGCCCCATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTTAAAAGAGGAAATACAACATGTCCCATCACACGACAACCTCTCTTTGCAAGCATATTACCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGCATCCGGAACTAGTTCAGGAATTCTCAAATTCTGACACATTAAGGGGTTCTCTGAGTTCTCCCTCCATAAAAGACATCCCAGTGGTCTCTAGTATGCAGAGAACAGCTGATTCGCCAACCCATAAGAACACAAATAATTATATTAGAAAGATGAGCAAAAGGTTTATGCAGGTCGTCGTCTCAACATCACCAACTAGTGTTATATCCCAAGCTGCAGTTGAAACAATTATAAATTGTTTGAAGCCTTATATTTCTAGTCTCTGCACATCAGAAAACTTGCAAGAATGCGAAGATGCTGTACTGGAAATAGCCAAAATTTGGAAGGACGCAAAGGCTGATCCCCAGATTCATTCTTATTTATCAGAACCAACTGTTATAAATGGTTTAGTGGAAATACTTTCTGTTTCTCTGAATAGAGAAGTTCTGAGAACATCAATTTATATCCTGTCAGAGCTAAGTTTTGTGGATGAAGGTGTTGGAGAAATACTTACCAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTGCTTAAGAATGGATTAGTGGAGGCTGCTGTTCTGATTTACCAACTGAGGCCAGTTTATGATCAACTTTTGGCTCATGAACTTATATCCTCCCTTGTCCAGCTGATCCAGAACAAAAAAGAGGAGTTGGATGATCTTCGATTCGTTATGGACCCCAAAGATGCAATCGTAGCCATTCTTGAGGAGATTTTGATGGGAGGGGATGAATATAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCCTGGTGAAGTATTTGGAAAGAATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTCTGTGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATAGCAAACAGAATTGAAATATCTCCTGTTCTTGAATTATTTCATGCTGGAAATGACAGCGTCAGAGGAATCTGTGTGGAGTTTCTCTCACAGCTGGTTCAATTGCATAGGAGGACATTGTGCAACCAGATATTGCAGATAATCAAGGATGAAGGAGCATTTAGTACCATGCATACATTTCTCGTATATCTTCAGATGGCCCCTATGGAGCATCAACCTGCCGTTGCTAGCCTTCTGTTACAGCTTGACCTTTTGGTGTGCCTTTCGACATCAATTCTGTTACAGAGCTGTAATTTGTTTTCTCTTGTTACCTCAAATTTGTCATCCAATTATATAGTTTGGTTATTGACAAATCTTCAGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGGCACTTATAGAAGCACTTTGGCGAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTACTATTTCTATTCGGGCACGTAACTCGCGCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGATTTGATCAACCTTACAATGCTCTAATAAAAGATGAGCAGTTGCAAAAATATGACAATAATTTGGTGGAAACAATGGAGGATGAAGAAAACGCTATGAGATCTTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAACGGTTCCATATTTAAAGCTTTGGAAGAATGCCTGAGGAGCAGCTCCTTGGAGACGGCAAAATCATGCCTTGTCATTGCCACATGGCTCACACACATGCTCTCTTCTATTCCAGATACTGGTATAAGGGATGTTGCTCGCATATCCTTGCTTGAAGAACTTATAAATGTCCTTCAGTCATCCAAGAACCTTGAGGAAATGATCCTGGCTACCCTCGCTTTGAAGACCTTTATTAGTGATCCTATTGCACTTGAAGCACTTGGAGCTTATGCCAAAAGCATCTATCGAACCTTGAGAAAGCTGAAGAAATATTCAGCGGTGGCAGCCATTATCATGAAAGCATTACTGAACCTAAAATCTGTTGATGTGACAGCATTGTGGAGTTGTACTGAAGTCATTGAGTCAGATTTAAGCTCAAACGGAGAAGTACTTTCTTTGCTTTATGTGAATGGTCGGGTGTTGAGTGGACACTCTGATGGAACTATGAAGGTGTGGGATGCTGGGAAGAGAGAATTACGACTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATGTCTCTACTCTTCAGGAGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACGATGAAATATGATGAGATTCAGCGTATTCAAGTTCACGATATCAAAGAGGCAGTGTATGAATTGATAGCAAGTGATAATTTGGCATGCTACGTGTATAATTGGTCGGAGGCTCCAAAGCTTATTAATTTCAACAAATATGTGAAATGCCTTGCCATGTCCGGGGACAAATTATATTGTGGTTGCTCCAATTACAGTATTCAGGAGGTAGACTTGTCGAATTATACATCAAACACATTTTTCTCCGGTACAAGGAAATTGCTAGGAAAACAAACCATACACTCTCTTCAAATTCATGATGGTTTACTGTTTGCTGGGGGTTCTTCAGTTGATGCATCTGCGGGAAAGATATTATCGCTGTCGTCCAAAGCTGTGGTGGGATCACTCTCAACAGGACTTGACATCAATTGCATAGCCATGAATAGTGACTTCATATTTACGGGCACCAAATGTGGCACCATTGAGGTATGGCTGAAGGATAAGTTAAGCAGGGTTGCTTCCATCAAAATGGCTGCAGGTCATACTAAAATCACGTCATTAGTAGCAGATGCAGATGGTTTCATGCTTTTTGTTGGTTCCTCTGACGGCAAGATCCAGGTTTGGGCTTTGGATTAG 4542 0.4097 MSQKDIVRFLTTTIDSFIQDRLINKERRIRHKEQCAERLAAEDGRIDKDSEVQYSDQAVLANLDWGIEALEEAINTFNMETKIARLDYAEKMLQVCALLNPNRKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNSIFHVLEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEDRHRLMMDVIPDSSHLSFTADFDQFFNESLIFTMRPHQLEKLQKLEQLYGESLDENTRLYAKYYKDCINYDSTSSKKVPMLPIAEPPMTPLHELSCSVPDYVKFGPILPKSAGFSPVLKPKDGANETIRVNVTSGHSKKVEKSSFIWGAKDMQESITEEYEGDSDYDLNDSFVDSDSKTQTVVSPRIHMTKNEDIEPKGHQSNQKSQIHSPTTFSPLDSPRAPQSNSSSIIDTNTKGVPKSLRLLSRRFSDSTISNSSPLSPHMSTDHSISSEDSENEVMGVKSSQRKNHEVAKIINRGKESILSFNDNSLYESDEGHSSSISLPKSEKLTVRSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLFASILPKTNYVLKRLITSWKEQHPELVQEFSNSDTLRGSLSSPSIKDIPVVSSMQRTADSPTHKNTNNYIRKMSKRFMQVVVSTSPTSVISQAAVETIINCLKPYISSLCTSENLQECEDAVLEIAKIWKDAKADPQIHSYLSEPTVINGLVEILSVSLNREVLRTSIYILSELSFVDEGVGEILTSVDSDFDCLATLLKNGLVEAAVLIYQLRPVYDQLLAHELISSLVQLIQNKKEELDDLRFVMDPKDAIVAILEEILMGGDEYSRSLNALSVISANGIPILVKYLERMEGRRSVVSILLCCMQAEKSCRSLIANRIEISPVLELFHAGNDSVRGICVEFLSQLVQLHRRTLCNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQPAVASLLLQLDLLVCLSTSILLQSCNLFSLVTSNLSSNYIVWLLTNLQVEPRKMSIFREEAVEALIEALWRKDFSNTQMKALDALLFLFGHVTRAGKSYTEAWLLKIAGFDQPYNALIKDEQLQKYDNNLVETMEDEENAMRSWQKRVAFVLCNHENGSIFKALEECLRSSSLETAKSCLVIATWLTHMLSSIPDTGIRDVARISLLEELINVLQSSKNLEEMILATLALKTFISDPIALEALGAYAKSIYRTLRKLKKYSAVAAIIMKALLNLKSVDVTALWSCTEVIESDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDAGKRELRLIQETHEHTKAVTCLYSSGDKLYSGSLDKTIRVWTMKYDEIQRIQVHDIKEAVYELIASDNLACYVYNWSEAPKLINFNKYVKCLAMSGDKLYCGCSNYSIQEVDLSNYTSNTFFSGTRKLLGKQTIHSLQIHDGLLFAGGSSVDASAGKILSLSSKAVVGSLSTGLDINCIAMNSDFIFTGTKCGTIEVWLKDKLSRVASIKMAAGHTKITSLVADADGFMLFVGSSDGKIQVWALD 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0079 1513 Gene3D - 1238 1513 IPR015943 GO:0005515
Dere04g0079 1513 ProSiteProfiles Trp-Asp (WD) repeats profile. 1479 1513 IPR001680 GO:0005515
Dere04g0079 1513 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Dere04g0079 1513 MobiDBLite consensus disorder prediction 376 410 - -
Dere04g0079 1513 Pfam WD domain, G-beta repeat 1280 1309 IPR001680 GO:0005515
Dere04g0079 1513 SUPERFAMILY RING/U-box 509 584 - -
Dere04g0079 1513 Gene3D - 647 937 IPR011989 -
Dere04g0079 1513 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
Dere04g0079 1513 MobiDBLite consensus disorder prediction 426 463 - -
Dere04g0079 1513 MobiDBLite consensus disorder prediction 348 362 - -
Dere04g0079 1513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 592 IPR013083 -
Dere04g0079 1513 SMART WD40_4 1232 1268 IPR001680 GO:0005515
Dere04g0079 1513 SMART WD40_4 1431 1467 IPR001680 GO:0005515
Dere04g0079 1513 SMART WD40_4 1470 1511 IPR001680 GO:0005515
Dere04g0079 1513 SMART WD40_4 1273 1310 IPR001680 GO:0005515
Dere04g0079 1513 SMART WD40_4 1343 1380 IPR001680 GO:0005515
Dere04g0079 1513 MobiDBLite consensus disorder prediction 444 463 - -
Dere04g0079 1513 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Dere04g0079 1513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1479 1513 - -
Dere04g0079 1513 ProSiteProfiles Trp-Asp (WD) repeats profile. 1280 1319 IPR001680 GO:0005515
Dere04g0079 1513 MobiDBLite consensus disorder prediction 426 443 - -
Dere04g0079 1513 Gene3D - 948 1237 IPR011989 -
Dere04g0079 1513 SUPERFAMILY WD40 repeat-like 1252 1512 IPR036322 GO:0005515
Dere04g0079 1513 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1512 - -
Dere04g0079 1513 CDD RING-Ubox_PUB 512 559 IPR045210 -
Dere04g0079 1513 MobiDBLite consensus disorder prediction 336 410 - -
Dere04g0079 1513 SUPERFAMILY ARM repeat 623 1183 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0079 Dere-ChrDere04 833910 840095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0079 501 906 U-box Gene Family AT1G23030 26.066 1.29e-19 93.2