LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g0072	ATGAAAGATGGGCTCACATCCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTAATGCAGAAGGAGAAAGATTGTGTTGTTAAGAATGTTGGTGATGCAACGAGGCAGTGGGCTGCTGTTGCCAGCACTATTGCCGCTACAGATAATAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGGCTCGGGTTCATTAATAGGTGGTTAAAAGATGCTCAAATAATTGGTGGTGACACAAATGAAGGCTTCATTGAAGAGTCAATTACTGCACTGTTACGAGCAATTGAAAAGCTGCATCTAGACAGTGAGAAGTCAATGTCATCAGGGATTTGGGTAACTGTAAGAAATCTTCTTGGCCATCATAGCTCTAGGGTTCAGGATGGAGCAAAAGTTTTATTTGACAGCTGGAAGGTGGGCAGAAATGGTGAAGTAGATTCTCATGAAATGGAGCTTGTTAGGGTCGATAATGGGAGTGACAAGATTGTCAAGGAGGAAGGTCAGCCGTCTACTCTGAATGAAGCTAGTATTGATAATGATCATGCATCACGACTTGTTGCAGGTGAGAAATCTCCATTAAGTAGCATAAATAGTCCACAACAAGAAAGGATTGCCAGTGTACAGATGGACTGTGAAAACTTTAAAGAGATATCACCAGACCATCTTGCTAATGTTTCAACTTCTGTTCAAGAAGCTCCCAAAAAAGAAGGATCACCTTCATGCACAGCAAGTGAGACCCCTTCAACTGGGTCCTATAGCTTTCCTCCTCCAAAGCAAGGCACTTTTGAAGGACAATCAGATGTGTTGAAGTTAAATGATTTATCCAAAATGGAGAAGCAGGAGCAAAATGTCAATGGTCTAGAAAAACTTGCAGTACCAGAGATCTCTGTGGAGTCCACAAAACCTGAGACTGGACCTATTTCTATGGGTGCTAGTGAAGCAAAAACACCAGAATTTGTGAACGAATCTGCATTACATCATAATGTTGAAAACAATGAGGATTTGGTCTGTCATAATGCCACTGATTCGGGTAGCATGAAGACACCTGCATCTGATAAAAAGAGTGGGGTGGATGATACTAGAGCTATAAATTCTAGTAATCCCCAGCTTTTCAAATCTGCAGAAATGGATGACGGCTGTTGTTCCAATGCATTGCAGGAATCATCAGTCAGTGGTAGTAACTTGGGAAAGCCTCCTGAGGTATTTGAGATGTCTTTCTCCAGAACAGAATATGTCAGTGCAGTAAAGGAAAGTAATGGGTGTGGCAGTAATGAAGGCAAGGAAATCTCAAATGGTTATGATCATATTAAATCAGGAAAACATCGCAGAAGCCCTAACATGGTTGACAGAAAGAGTTCTGATATTGAACTTGAATATGGGATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAAGAAGTTGAGCGGGAAGTCTGCAGCACTTCTTCAGAGAAAATCTCAGAAGGAGGAATGAGGCAACCAAGTAGCCCAGATTCTATAGGAAAAGAGGATGCACTCTCTTGTGTTGCACCTAATGAGGTCCCGTCAAGACAAAGCTACTCTGCTGAGGCATGTCTAGAGGAGGACGGACATGCAAGTATTTCTGACAATGTTGAGGCGGAGCCAGATTGCATACCTGATGTGGAGTCATCACATGTGACTGAAGCAGCATTAGATGCAGGTGGTAATTCAGAGAAAAGTCTCTGTGCCTTTGATCTCAATGAAGAATGTGGTTCTGATGATATGGATAATTCTGTAAATGTAATTTCTACGCCAATACCTGTTGTAAATGTAATGTCTGATGATATGCCAGCAGCAACCACTGGGTTGCCTGTGGCTCCTTTGCAGTTCAAGGGAACACTTGGATGGAAAGGATCTGCTGCAACCAGTGCCTTCCGTCCTGCATCACCTCGTAAAAATTCTGATAGTGAGAAGAATATTTTCATTAGTTGGAACTCTGATATTTCCAAGCAAAGGCAGGATTGCCTTGACATTGATCTGAATGTGGCCGGGAGTGAAGATGGATTGGGAAAACAAATTGCTGAATCGTCTGGCCTTCCTTCTGGGCAATCATCAGTGGAGCTTAGTCCTAGGAGATCAAGGAGGCTTGAATTGGATTTGAACAGTATTGGTGATGACGTTGATGCCCAACCTTCAGATCAAAGGATGGGGGGACAGCTCTTGTATGGTAGAAATGGCCATTGGAGCCCGTCACCTGCATCATCAACATCATCAATGCAGCCTTCTGTTAGAAACTTTGATTTAAATGACAGGCCATTCCTTCAAACTGATTTGGTGGACAGAGGGCCCAGTAAGTCTTCTCATATTACAAATGTATATGGGGGTTCTAAACCAGATGCTCCTGTTATCTCTATCTTGGGTGCCAAAGTGGAAGTTGGTAGAAGAGAAACTAGGTCTTCTCCAAATGGCAAGGCTATGGAGCCTGCAATGGATCTAACAATGTCAAGAGCTGATGGTGATTTAGGGCTGGGCCCCACAGTGTCTTACAGCCATTCACCTACGTTTGGGTATAATGGGCTAACATCAGTGTCCCCTTTGTCTTTTTCGTCATCAATGTATAGTTCAGGAGGCACAGTTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTGCCTCAGGTGGTGGGATCTTCCTCAACTGTCTTGTCATCTTATTCCCAGTCTCCATTCGTGATGAGCATGGCCGGTTCACAACTTGGTTTAAATGGGATTGGGTCTTCACGTCCTAACTTCGACCTAAATTCTGGCTTCATGATTGAGGGAGGGAATAGAGACGCATTGGCTGCAAGGCAATTTTTCTTTCCTGGTCAGAGCAGGGCTATAGAGGAGCATGTAAGGATCATACAACAGCCCTCAAGTTCTGGGGTTGGTGGGAAAAGAAAGGAACCTGACAGTGGGTGGGAAACCTACCCATTTAGCTACAAACACTCGCAACCTCCATGGAAGTAG	2967	0.4365	MKDGLTSPSRVQELVSVMQKEKDCVVKNVGDATRQWAAVASTIAATDNKDCLDLFIQLDGLGFINRWLKDAQIIGGDTNEGFIEESITALLRAIEKLHLDSEKSMSSGIWVTVRNLLGHHSSRVQDGAKVLFDSWKVGRNGEVDSHEMELVRVDNGSDKIVKEEGQPSTLNEASIDNDHASRLVAGEKSPLSSINSPQQERIASVQMDCENFKEISPDHLANVSTSVQEAPKKEGSPSCTASETPSTGSYSFPPPKQGTFEGQSDVLKLNDLSKMEKQEQNVNGLEKLAVPEISVESTKPETGPISMGASEAKTPEFVNESALHHNVENNEDLVCHNATDSGSMKTPASDKKSGVDDTRAINSSNPQLFKSAEMDDGCCSNALQESSVSGSNLGKPPEVFEMSFSRTEYVSAVKESNGCGSNEGKEISNGYDHIKSGKHRRSPNMVDRKSSDIELEYGIVDALEVARQVAQEVEREVCSTSSEKISEGGMRQPSSPDSIGKEDALSCVAPNEVPSRQSYSAEACLEEDGHASISDNVEAEPDCIPDVESSHVTEAALDAGGNSEKSLCAFDLNEECGSDDMDNSVNVISTPIPVVNVMSDDMPAATTGLPVAPLQFKGTLGWKGSAATSAFRPASPRKNSDSEKNIFISWNSDISKQRQDCLDIDLNVAGSEDGLGKQIAESSGLPSGQSSVELSPRRSRRLELDLNSIGDDVDAQPSDQRMGGQLLYGRNGHWSPSPASSTSSMQPSVRNFDLNDRPFLQTDLVDRGPSKSSHITNVYGGSKPDAPVISILGAKVEVGRRETRSSPNGKAMEPAMDLTMSRADGDLGLGPTVSYSHSPTFGYNGLTSVSPLSFSSSMYSSGGTVPYMVDSRGAPVVPQVVGSSSTVLSSYSQSPFVMSMAGSQLGLNGIGSSRPNFDLNSGFMIEGGNRDALAARQFFFPGQSRAIEEHVRIIQQPSSSGVGGKRKEPDSGWETYPFSYKHSQPPWK	988

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g0072	988	PANTHER	TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED	1	988	-	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	428	446	-	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	415	446	-	-
	Dere04g0072	988	Pfam	TFIIS helical bundle-like domain	90	136	IPR017923	-
	Dere04g0072	988	ProSiteProfiles	TFIIS N-terminal domain profile.	62	142	IPR017923	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	955	988	-	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	677	698	-	-
	Dere04g0072	988	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	8	139	IPR035441	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	480	502	-	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	224	262	-	-
	Dere04g0072	988	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	50	145	IPR035441	-
	Dere04g0072	988	MobiDBLite	consensus disorder prediction	340	361	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g0072	Dere-ChrDere04	801758	804724	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Dere04g0072		Med26	0.00015	No_clan