Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0063 ATGATTTGGCAATATAGAAAACAGGGGTCTACATCGTATACAAATACAACCTCGCAGAAACACCCAAAACAATATTATATTACTGTGAGAAGAGTGCGTCTGCAAGCTGCAAAGCTGCAACTTAGACGTCACCTTACAATGGAAGAAGTGGAGCTTGCCTCCCATTCAGGCTCCGGACAAAGCCAGTCGTCCAAATCAAGCAGACCCAAGAGTGTTTCCTTCTTTGGCTTGTTCGCTGCTGCTGAGACAATTGACTATGTCTTAATGTTCTTGGGAAGCATTGGTGCTTGCGTCCACGGGGCGGCTCTTCCTGTATTCTTTATCTTGTTTGGCCGTATGATTGATTCTTTGGGTCATCTTTCTAAACATCCACACAAGTTGTCCTCTAGCATTTCCGAGAATGCTTTGTACTTGGTCTATCTTGGACTCGTTGTTATGGCATCGGCTTGGATGGGGGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACAGCTCGTTTGCGCTTGAAGTATCTGCAATCAGTTCTAAAAAAGGATATTAATTTCTTTGACAACGAAGCAAGAGACGCTAATATCATTTTTCACATCTCCAGTGACGCAATATTGGTACAAGATGCAATCGGCGACAAGACGGGCCATGCTATACGTTACCTATCACAATTCATTGTTGGATTTGCCATTGGATTTACGTCAGTATGGCAACTTACACTGCTCACCTTGGCGGTTGTTCCATTGATAGCTGTAGCTGGGGGAGCTTATACTATTACTATGTCTACCTTGTCAGAAAAAGGTGAAGCAGCTTATGCAGAAGCTGGGAAAGTGGCAGAGGAGGTAATTTCTCAAGTTCGTACTGTGTACTCATTTGTGGGAGAAGATAAAGCAGTTGCCTCATACTCCAAGTCTCTTGATAATGGTCTGAAACTGGGGAAGAAGAGTGGTTTTGCAAAAGGAGTCGGGGTAGGCTTAACATATGGGCTGCTGTTTTGCGCTTGGGCATTGCTTCTCTGGTATGCGAGCATACTCGTGAGGCACCATAAAACAAATGGAGGGAAAGCATTCACAACTATCATTAATGTCATCTTTAGTGGATTTGCTCTCGGTCAGGCTGCTCCTAACCTTGGTTCCATTGCTAAAGGGCGTGCTGCTGCTGCCAATATCATGAACATGATTGCATCAGTTTCAAACACACCTACAAGTTTGGACAAGGGGATTGTTTTGCCACAAGTGGCAGGAAACATTGAATTTCGTGAGGTCTGCTTTTCTTACCCCTCAAGATCGAACATGGTCTTTGAAAATTTGACCTTTTCAGTAACTTCGGGGAAGACTATCGCAGTTGTTGGTCCTAGCGGTTCAGGAAAGAGCACAATCATTTCCATGATCCAACGATTTTATGACCCCACTTCGGGTAAGATACTATTGGATGCACATGACCTAAAGAGTCTTCAACTGAAATGGTTGAGGGAACAAATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATATCTGGAAATATTTTACTTGGAAAAGAAGATGCAGACATGGATCAAATTATACAAGCTGCCAAAGCGGCAAATGCTCATTCTTTCATTGAAGGGCTACCCGATGGCTATCAGACTCCGGTTGGTGAGGGTGGCACACAACTTTCAGGAGGGCAAAAGCAAAGAATTGCAATAGCAAGAGCGGTGCTCAGAAACCCAAAAATATTACTTCTAGATGAGGCTACTAGTGCACTTGATGCTGAATCAGAACTAATAGTTCAGCAGGCACTGGAAAAATTAATGTCAAATCGGACTACTATAATTGTTGCTCACCGATTATCCACCATTCGTGATGTTGATACGATAGTGGTCTTGAAGAATGGTCAGGTTGTTGAAAGTGGGACTCATTTGGATTTGATGTCCAAAAATGGGGACTACATGCATTTGGTGAGTTTGCAGGCAACAGAAAACCCGATCACGAGTTCTAGCGCAATATCTCGCTCTGGAAGTTCAAGAGATTCCAGTTTTCGAGAAGTTTCAGAGAACCAGAAGTACCCGGATGAATTGAAGTCAATTACAACAAGAGAGGCTCTGCCAAGCGACCAAAGCTCCATTCCAGCAATCATGGAGTTACTGAAACTGAATGCTCCTGAGTGGCCCTTTGCAATACTTGGATCAGTGGGTGCAATTATGGCAGGCATGGAAGCTCCTCTCTTTGCCTTTGGTATAACGCATATATTGACTGCATTCTACTCTCCGAACGGTTCTAAAATCAAGCAAGAGGTTGATCGGGTAGCTCTTATATTTGTTGGAGTGGCCGTTGTTACTATACCTATTTACTTGTTGCAACATTACTTTTATTCATTGATGGGAGAGCGTCTCACAGCTCGTGTACGCTTATTAATGTTCTCAGCTATCCTAACCAACGAAGTGGCATGGTTCGACTTGGATGAGAACAACACTGGATCACTAACAGCTACGCTAGCTGCAGATGCAACGTTAGTAAGAAGTGCTTTGGCTGACAGACTTTCTACAATTGTACAAAATGTAGCTCTCACAGTAACAGCGTTTGTTATTGCTTTCACATTGAGTTGGAAATTAACAGCTGTGGTCGTAGCTTGCTTGCCCCTTCTTATTGGGGCTTCTATCACTGAACAACTATTTCTCAAAGGACTTGGAGGAGATTACAGCGGCTCCTACTCTAGAGCAACTTCTTTGGCACGTGAAGCTATTTCCAATATACGCACTGTTGCTGCTTTTGGCGCAGAAGATCGAATCTCGTTCCAATTTGCCTCTGAATTGAACAAACCTAACAAACAAGCACTTTTACGAGGCCACATATCAGGCTTTGGATATGGTGTAACACAGTTGTTTGCTTTCTGCTCTTATGCACTTGGCCTTTGGTATGCTTCCATCTTGATCAAGCATAAGGAGTCTAATTTTGGAGACATTATGAAGTCTTTTATGGTTTTAATCATCACTGCTTTGGCAATAGCGGAAACACTAGCTCTTACCCCAGACATTGTAAGGGGATCACAAGTGCTGGGGTCAGTTTTCGGTATTCTCCGAAGGAAAACAGCCATCCCTCCCAATGACCCCAACTTGAAGGTGGTAACTAATGTGAATGGAGAGATAGAGTTTAAAAATGTGCGCTTTAGCTATCCAATGAGACCCGATATCACCATTTTCCAGAACTTAAACCTAAAAGTTAGAGCAGGAAAGGGTCTCGCAGTAGTTGGGCAAAGTGGTTCCGGGAAAAGTACTGTGATCTCACTGGTAATGAGATTTTATGACCCAACTTTTGGGATGGTTCTAATCGACGGTTGTGATATCAAAAGCCTCAACTTGAGATCCTTGAGGCAGAGAATAGGTTTGGTTCAACAAGAACCTGCTTTATTCTCTACCACAATATATGAAAACATTAAATATGGAAATGGGGAGGCATCAGAGATTGAGGTAATAAAGGCAGCAAAAGCAGCAAATGCCCATGGATTCATCGTTGGAATGCCTGAAGCGTATCAAACAGAGGTTGGTGAGAGAGGAGTGCAGTTATCAGGGGGCCAGAAACAGAGGGTTGCAATCGCTAGAGCTATTCTTAAAGACCCATCCATTCTTTTGTTGGATGAAGCAACAAGTGCGTTAGACACAGCATCAGAGAGGCTGGTCCAAGAAGCTCTAGAGAAGCTTATGGAAGGCCGAACAACAATCCTGGTAGCACACAGGTTGTCAACGGTTCGTAATGCACACAACATTGCGGTGCTGCAAAACGGGAGAGTGGCAGAAATGGGCAGCCATGAGAGGCTCATTGCCCAACCGGAAAGCATCTATAAGCAACTGGTCAATCTACAGCAGGAAAACAGTAACCATTGA 3858 0.4373 MIWQYRKQGSTSYTNTTSQKHPKQYYITVRRVRLQAAKLQLRRHLTMEEVELASHSGSGQSQSSKSSRPKSVSFFGLFAAAETIDYVLMFLGSIGACVHGAALPVFFILFGRMIDSLGHLSKHPHKLSSSISENALYLVYLGLVVMASAWMGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDKAVASYSKSLDNGLKLGKKSGFAKGVGVGLTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASVSNTPTSLDKGIVLPQVAGNIEFREVCFSYPSRSNMVFENLTFSVTSGKTIAVVGPSGSGKSTIISMIQRFYDPTSGKILLDAHDLKSLQLKWLREQMGLVSQEPALFATTISGNILLGKEDADMDQIIQAAKAANAHSFIEGLPDGYQTPVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKLMSNRTTIIVAHRLSTIRDVDTIVVLKNGQVVESGTHLDLMSKNGDYMHLVSLQATENPITSSSAISRSGSSRDSSFREVSENQKYPDELKSITTREALPSDQSSIPAIMELLKLNAPEWPFAILGSVGAIMAGMEAPLFAFGITHILTAFYSPNGSKIKQEVDRVALIFVGVAVVTIPIYLLQHYFYSLMGERLTARVRLLMFSAILTNEVAWFDLDENNTGSLTATLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTAVVVACLPLLIGASITEQLFLKGLGGDYSGSYSRATSLAREAISNIRTVAAFGAEDRISFQFASELNKPNKQALLRGHISGFGYGVTQLFAFCSYALGLWYASILIKHKESNFGDIMKSFMVLIITALAIAETLALTPDIVRGSQVLGSVFGILRRKTAIPPNDPNLKVVTNVNGEIEFKNVRFSYPMRPDITIFQNLNLKVRAGKGLAVVGQSGSGKSTVISLVMRFYDPTFGMVLIDGCDIKSLNLRSLRQRIGLVQQEPALFSTTIYENIKYGNGEASEIEVIKAAKAANAHGFIVGMPEAYQTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTASERLVQEALEKLMEGRTTILVAHRLSTVRNAHNIAVLQNGRVAEMGSHERLIAQPESIYKQLVNLQQENSNH 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0063 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 413 648 IPR003439 GO:0005524
Dere04g0063 1285 FunFam ABC transporter B family member 4 1031 1284 - -
Dere04g0063 1285 FunFam ABC transporter B family member 4 403 656 - -
Dere04g0063 1285 MobiDBLite consensus disorder prediction 657 679 - -
Dere04g0063 1285 SUPERFAMILY ABC transporter transmembrane region 707 1021 IPR036640 GO:0005524|GO:0016020
Dere04g0063 1285 ProSitePatterns ABC transporters family signature. 551 565 IPR017871 GO:0005524|GO:0016887
Dere04g0063 1285 Gene3D - 403 650 IPR027417 -
Dere04g0063 1285 Gene3D - 1031 1285 IPR027417 -
Dere04g0063 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 90 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere04g0063 1285 Pfam ABC transporter 1060 1208 IPR003439 GO:0005524
Dere04g0063 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 89 386 - -
Dere04g0063 1285 SUPERFAMILY ABC transporter transmembrane region 83 386 IPR036640 GO:0005524|GO:0016020
Dere04g0063 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1279 IPR027417 -
Dere04g0063 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1041 1277 IPR003439 GO:0005524
Dere04g0063 1285 Pfam ABC transporter transmembrane region 90 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere04g0063 1285 Pfam ABC transporter transmembrane region 720 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere04g0063 1285 CDD ABC_MTABC3_MDL1_MDL2 413 649 - -
Dere04g0063 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 708 1024 - -
Dere04g0063 1285 CDD ABC_MTABC3_MDL1_MDL2 1041 1279 - -
Dere04g0063 1285 SMART AAA_5 439 625 IPR003593 GO:0016887
Dere04g0063 1285 SMART AAA_5 1068 1254 IPR003593 GO:0016887
Dere04g0063 1285 Pfam ABC transporter 431 579 IPR003439 GO:0005524
Dere04g0063 1285 MobiDBLite consensus disorder prediction 657 672 - -
Dere04g0063 1285 ProSitePatterns ABC transporters family signature. 1180 1194 IPR017871 GO:0005524|GO:0016887
Dere04g0063 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1006 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere04g0063 1285 PANTHER ABC TRANSPORTER B FAMILY 55 730 IPR039421 -
Dere04g0063 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 649 IPR027417 -
Dere04g0063 1285 Gene3D ABC transporter type 1, transmembrane domain 76 1008 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0063 Dere-ChrDere04 715125 723898 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0063 62 1280 Calmodulin-binding Proteins AT2G36910 49.440 0.0 1220