Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0055 ATGCCTTCATTGAAACTTGATTCAATTTGCTCCAGTCTTCTTGTGGCTTTATTGAGATTTAATAGATTTCGTGGAGGCATAACGAGTCGGATAATGCCTCAAGTTGAGAACGAGTTTGTACAACCAAGAAAGAAAATGGGGAAAATGATGATTGTTTGGGCCAGCCTGGTGGGATTATGGTATGTCACAATGAGTGCATGCGCCTTCTCACCCTCCGGATGGACCAAAGGACATGCCACTTTTTATGGGGGCAGCGATGCCTCGGGAACCATGGGGGGAGCTTGTGGGTATGGGAATCTGTACGCAACAGGATATGGGACTAGAACTGCGGCTTTAAGCACTGCCTTATTCAATAATGGAGCTTCCTGTGGAGAATGCTATAGAATCATATGCGATTATCAGACAGACCCCAGATGGTGCCTGAAAGGAGCATCTGTAACTATCACTGCCACAAACTTCTGCCCTCCTAATTATGCTCTTCCAAACGACAACGGAGGGTGGTGCAACCCTCCTCTCAAGCACTTCGATATGGCTCAACCCGCCTGGGAAAAGATTGGTATATACAGAGGAGGGATCGTCCCCGTCTTGTTCCAAAGGGTTCCCTGTAAGAAGCACGGAGGGGTCAGGTTCACGGTGAATGGGAGAGACTACTTTGAGCTGGTAATGATCAGCAATGTGGGAGGGGCTGGATCCATCGCATCTGTGTCCATCAAAGGCTCAAAGACTGGTTGGATGGCTATGTCCAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCATTCAGGGTCACAACCTCTGATGGAGAAACCAGACTCTTCCAAGGTGTGGTTCCATCTAACTGGGCATTTGGCCAGACATTCTCTAGCCGGGTCCAGTTCTAA 903 0.4806 MPSLKLDSICSSLLVALLRFNRFRGGITSRIMPQVENEFVQPRKKMGKMMIVWASLVGLWYVTMSACAFSPSGWTKGHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNNGASCGECYRIICDYQTDPRWCLKGASVTITATNFCPPNYALPNDNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTVNGRDYFELVMISNVGGAGSIASVSIKGSKTGWMAMSRNWGANWQSNAYLNGQSLSFRVTTSDGETRLFQGVVPSNWAFGQTFSSRVQF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0055 300 Gene3D - 61 203 IPR036908 -
Dere04g0055 300 FunFam Expansin 207 300 - -
Dere04g0055 300 SUPERFAMILY PHL pollen allergen 204 296 IPR036749 -
Dere04g0055 300 FunFam Expansin 63 203 - -
Dere04g0055 300 PANTHER EXPANSIN-A15 56 297 IPR002963 GO:0009664
Dere04g0055 300 Pfam Lytic transglycolase 109 196 IPR009009 -
Dere04g0055 300 SUPERFAMILY Barwin-like endoglucanases 73 225 IPR036908 -
Dere04g0055 300 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 217 296 IPR007117 -
Dere04g0055 300 SMART dpbb_1 109 197 IPR007112 -
Dere04g0055 300 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Dere04g0055 300 PRINTS Expansin/Lol pI family signature 190 206 IPR007118 GO:0005576
Dere04g0055 300 CDD DPBB_EXPA_N 73 202 - -
Dere04g0055 300 PRINTS Expansin signature 133 144 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 165 182 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 104 118 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 182 195 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 206 218 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 146 156 IPR002963 GO:0009664
Dere04g0055 300 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Dere04g0055 300 Gene3D - 207 300 IPR036749 -
Dere04g0055 300 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 207 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0055 Dere-ChrDere04 649433 652142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0055 109 300 Expansin Gene Family AT1G20190 82.812 1.79e-120 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0055 04 649433 652142 Dere04g0055 04 649433 652142 ECH