Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0052 ATGATGAGGGGGAAGAACGGGGGGAGGGTGGGCATATCGGGAGGGATGAAAATGGTCCAAATGGGGAATAGTGGAAAAAAAGAACTTTGGGAAGCGTCGGGTGAACTGGCCCGTCACACTAATGGGAATAGCAAAGCATTTCAAAAGAGAAAGGCGAGACATGTGATTGGCGGGAAGGGTAAGGGCCCCAAGACAAGCTGGCACTGGGTCCGTAGCACGGACGCCTTCATTCTGCGCTATGGTGTGCGGCTGTGCCCTCCGCCCCTCCCCATCCCCTTCCCTTCTCTACCAGCCTCCGCCGCCGCATTAATTGGGGTTGGGCTCTCCCTTCCTCTTTGCCCAATTCCCAATCGGTCATCGCAACGCCCCAATACCAAAATGCTCGATTCCGTTCTCCTCGCACTTTTCCTGCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGCCTTCTCTGGTACGCCACTACCCATCGCCCCGACGTCGTGCTGCCGGCCAAGGCCCCCTCTGAGAAGGGCTTGTCGGCTTCGGAGCTGGAGAAGTTGCCCAAGATCACCGGAAAGGAACTAGTGATGGGGAGTGAATGCGCAGTGTGCCTGGACGAGATCGAGAACGAGCAACCGGCACGCTTGGTTCCCGGTTGCAATCACGGGTTCCACGTGGAATGCGCCGATACTTGGCTTTCCAAGCACCCTCTGTGTCCGGTTTGTCGAGCCCAGCTCCATCCTCAACTTTTCAATTCTTGTGAAAATCCATGCTAG 765 0.5673 MMRGKNGGRVGISGGMKMVQMGNSGKKELWEASGELARHTNGNSKAFQKRKARHVIGGKGKGPKTSWHWVRSTDAFILRYGVRLCPPPLPIPFPSLPASAAALIGVGLSLPLCPIPNRSSQRPNTKMLDSVLLALFLPCLGMSAVFMVYMCLLWYATTHRPDVVLPAKAPSEKGLSASELEKLPKITGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKHPLCPVCRAQLHPQLFNSCENPC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0052 254 SMART ring_2 197 238 IPR001841 -
Dere04g0052 254 Pfam Ring finger domain 196 239 IPR001841 -
Dere04g0052 254 ProSiteProfiles Zinc finger RING-type profile. 197 239 IPR001841 -
Dere04g0052 254 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 127 244 - -
Dere04g0052 254 SUPERFAMILY RING/U-box 185 245 - -
Dere04g0052 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 245 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0052 Dere-ChrDere04 627251 628774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0052 127 254 C3H Transcription Factor Family AT5G42200 53.676 6.51e-44 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2846 05 39062069 39062455 Dere04g0052 04 627251 628774 CCT
Dere04g0052 04 627251 628774 Dere04g0052 04 627251 628774 ECH