Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0045 ATGGTGGGAGATAAATCGGACAACGTTGTCTACCTTCATGGGGACCTTGATTTAAAAATTCTCGAGGCTCGGTGTCTGCCAAACATGGACTTGTTTACGGAGCGTGTCAGTCGATTCTTTTCCCTCTTCAACTCCTGCACTGTTTCATTCTCCGGTAAACAGAAACACCGCCATCACAGAAAAATCATTACCAGCGATCCTTACGTCACCGTTTGCCTCGCCAGAGCAACGGTGGCTCGCACTCGTGTCATCTCCAACTCGCAGGATCCGACGTGGAATGAGCATTTCAAAATCCCTCTCGCTCATCCTGTCTCGCAGGTCGAATTCTACGTTAAGGACAATGACTTTTTCGGCGCTGATCTCATCGGAGTCGCTACCGTCTCTGCCGAGAGAATCTTATCTGGTGAACTTATCAGTGACTGGTTCCCCATAATTGGTTCTAGTGGGAAACCACCCAAGCATGATTGTGCCGTTCGTCTCGAGATGAAATTCACGAAATGCGAGGACACTCCTCTGTACCGCTTCGGCATTGCTGCAAATCCGGACAATTTCGGAGTGCGGGATTCTTATTTTCCGGTGCGTCATGGAGGATCAGTGACCTTATATCAGGACGCACACGTTCCTGAGTCGATGTTGCCGGAAATTGAATTGGAGAATGGCAATGTCTTTCAGCACGGCAGATGTTGGGAAGATATATGTCATGCAATTTTGGAGGCGCACCATATGGTTTACATTGCAGGCTGGTCAATCTACCATAAGGTGAAGCTGGTGAGGGAGCCAACCAAGCCCTTACCTAGCGGTGGGAATTTGAGTTTGGGTGATTTACTGAAGTACAAGTCGGAAGAAGGTGTGCGAGTTTTATTATTGGTTTGGGATGATAAGACTTCACACAGCAAATTTTTCATTAATACGGATGGAGTAATGCATACTCACGACGAAGAAACTCGAAAGTTTTTCAAACACTCTTCGGTTTCATGTGTGCTGTCACCTCGATATGCCAGCAGTAAGCTTAGCATTTTCAAACAGCAGGCATGCTTTAGTAGCTTTTTCCATATAATGTCATGTTTGTCTCAGAAAATTCCTCATTGTTTCATCATGCTTTCCTTCCTTTACCCTGCTAGAGTCGTTGGAACACTCTTTACGCATCATCAGAAATGTGTGGTTGTGGATACTCAAGCACATGGCAATAATCGCAAGATAACTGCATTTATAGGTGGTCTGGACCTTTGCGATGGCCGGTACGATACACCTGAGCATCGGCTGTTCCGTGATCTTAACACTGTTTATGAGGATGATTATCACAACCCAACATTTTCTGCAGGAATGAAGGGTCCAAGGCAACCGTGGCATGATTTGCATTGCAAAATTGAGGGGCCTGCCGCATATGATATCCTTACTAATTTTGAGCAACGCTGGAGAAAAGCCACCAAGTGGTCCCGGTTGGGTAAAAAAATTAAAAGAGTATCTCATTGGCATGATGATTCTTTGATAAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCGGCATCAACTCCAAATGACGATCCAGAATTGTGGGTTTCAAAGGAAGATGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCAATAGATTCAGGTTCGGTGAAAGGATTTCCTAAAAATGTGTATGAAGCTGAGGCTCAGAATCTTGTTTGTGCAAAAAATTTGGTCATAGACAAGAGTATACAAACAGCATACATACAGGCTATCAGATCTGCTCAACATTTTATTTACATTGAGAATCAATATTTCCTCGGATCATCTTTTGCGTGGCCATCTTACAAAGAAGCAGGTGCTGACAATTTAATTCCTATGGAGTTGGCATTAAAGATCGTCAGTAAAATTAGAGCCAAGGAGAGATTTGTTGTTTATGTTGTCATACCAATGTGGCCTGAAGGCGTCCCTTCTTCTGCCTCGGTGCAAGAGATTCTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAATCATAGCACAGGAGCTAAAATCCATGCACCTTGACAATAGCCACCCAAAAGATTACCTCAATTTCTACTGTCTAGGAAATCGGGAGAACTTGCCGACTGAAATTTCAAGTTCAAGTAATTCACTTTCAAATAACGGTGATACGGCTTCAGTTTCACAAAAGTTCCAACGATTCATGGTTTATGTACACGCCAAAGGAATGATTGTTGATGATGAGTATGTGATACTTGGGTCCGCCAATATCAATCAACGATCTTTGGCTGGTTCAAGAGATACTGAGATAGCAATGGGTGCATATCAACCTCATCATACATGGGGAAAGAAAAAGGGACATCCTTATGGTCAGGTTTATGGGTATAGAATGTGTTTGTGGGCAGAACATTTGGAGGTGGTGGAGGGTTGCTTCAAGGAGCCTGAAAGTTTGGAATGCGTGAAGCGTGTTAACAAGATTGCGGAAGACAACTGGAACAAGTACACAGCTGAGGAGTTCACTCCGTTGCAGGGGCACCTTCTGAGATACCCAATATACGTAGATGTGAATGGGAAGGTACGCCCCTTACCTGGATTTGAATCTTTCCCGGATGTGGGGGGCAAGGTACTTGGTTCCCGGACTAACCTTCCTGATGCCCTCACTACATAG 2631 0.4417 MVGDKSDNVVYLHGDLDLKILEARCLPNMDLFTERVSRFFSLFNSCTVSFSGKQKHRHHRKIITSDPYVTVCLARATVARTRVISNSQDPTWNEHFKIPLAHPVSQVEFYVKDNDFFGADLIGVATVSAERILSGELISDWFPIIGSSGKPPKHDCAVRLEMKFTKCEDTPLYRFGIAANPDNFGVRDSYFPVRHGGSVTLYQDAHVPESMLPEIELENGNVFQHGRCWEDICHAILEAHHMVYIAGWSIYHKVKLVREPTKPLPSGGNLSLGDLLKYKSEEGVRVLLLVWDDKTSHSKFFINTDGVMHTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQACFSSFFHIMSCLSQKIPHCFIMLSFLYPARVVGTLFTHHQKCVVVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLNTVYEDDYHNPTFSAGMKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATKWSRLGKKIKRVSHWHDDSLIKLERISWILSPSASTPNDDPELWVSKEDDPENWHVQVFRSIDSGSVKGFPKNVYEAEAQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIVSKIRAKERFVVYVVIPMWPEGVPSSASVQEILFWQGQTMQMMYEIIAQELKSMHLDNSHPKDYLNFYCLGNRENLPTEISSSSNSLSNNGDTASVSQKFQRFMVYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAYQPHHTWGKKKGHPYGQVYGYRMCLWAEHLEVVEGCFKEPESLECVKRVNKIAEDNWNKYTAEEFTPLQGHLLRYPIYVDVNGKVRPLPGFESFPDVGGKVLGSRTNLPDALTT 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0045 876 SUPERFAMILY Phospholipase D/nuclease 189 482 - -
Dere04g0045 876 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 378 413 IPR001736 GO:0003824
Dere04g0045 876 Gene3D C2 domain 9 165 IPR035892 -
Dere04g0045 876 Gene3D Endonuclease Chain A 530 768 - -
Dere04g0045 876 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 722 749 IPR001736 GO:0003824
Dere04g0045 876 Pfam C2 domain 14 144 IPR000008 -
Dere04g0045 876 SMART C2_3c 15 141 IPR000008 -
Dere04g0045 876 CDD C2_plant_PLD 9 165 - -
Dere04g0045 876 SMART pld_4 378 413 IPR001736 GO:0003824
Dere04g0045 876 SMART pld_4 722 749 IPR001736 GO:0003824
Dere04g0045 876 Pfam Phospholipase D C terminal 797 866 IPR024632 -
Dere04g0045 876 Pfam Phospholipase D Active site motif 379 413 IPR001736 GO:0003824
Dere04g0045 876 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
Dere04g0045 876 PANTHER PHOSPHOLIPASE D 6 866 IPR015679 -
Dere04g0045 876 PIRSF PLD_plant 1 876 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere04g0045 876 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 164 IPR035892 -
Dere04g0045 876 SUPERFAMILY Phospholipase D/nuclease 570 806 - -
Dere04g0045 876 Gene3D Endonuclease Chain A 218 495 - -
Dere04g0045 876 Pfam PLD-like domain 575 758 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0045 Dere-ChrDere04 562494 575746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0045 1 706 Phospholipase D Gene Family (Wang group) AT4G35790 63.912 0.0 961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g0045 04 562494 575746 Dere04g0045 04 562494 575746 ECH