Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0030 ATGGGAGACGGTGCCGTGTCACCCGGTACCTTGCTGGATTCGTCCATGAATTTCGATTACATGGATGAGCTTTTCTTAGAAGGATGCTGGTTGGAAACCACTACAGATGGATCTGATTTCTTGCTGCAAAGTCCCTCTACCTCTAATCCCCTCCTCGACCCTTCGATTTCATGGCCTGCCTTGGACACTAATGGACATGGAAATCTAGAAGCAAGACAGAGTCCCTTGTTTAATGACTTACAGGAAACACGAATCAATACTCGATCGGTTGGCAAGTGCAAGGATATAATTAATGTTGCAGGTACTTGCAATCAGTCTGAAATTCATTCAGTTGAAAGCTCAGAAGTCGCCAGAAGGTGGTGGATTGGACCCAGGCCTAATCCGTCCCCTAAATCTTCGGTGCTGGAGAGACTGATTAAGGCACTAGTGTATATAAGAGATCTCAATAGAGACAAAGATATGCTTTTACAAATATGGGTGCCAATTAATAGAGGGGGTAGAAGGATTCTAACCACAAGTGATCTTCCTTTCTCACTTGAAACCTGCTATTCAAATCTTGCAAAGTACCGAGTAATCTCTGAGAAATATCAGTTTTCAGCTGAGGAGGACTCTAAGGGGTTGGTGCCAGGATTGCCTGGTCGAGTTTTTACAGAGAAGGTTCCTGAGTGGACTCCTGATGTCCAATTTTTTAGGAGTGATGAGTACCCTCGAGTTGACTATGCTCAAGAGTACGATGTACGAGGATCTTTAGCCCTTCCAATCTTTGAGCAAGGTAGCAGGATTTGCTTGGGTGTTATTGAGGTTGTGATGACTACCCAGCAGATCAAGTACTTCCCTGAACTCGAAAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACCTTCAAGTATATGGAATGTGAAGACATACAACAATTCCTACGAGGCTGCCCTACCTGAGATTCAAGAGGTGTTGAGATCCGCATGCGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCCAACAAGGGAAAGAGGGATGCCGACACACAGACGATAATTTTCTACATTGTATATCTCCTGTGGAGCAAGCTTGTTATGTTGGTACTCCCACTGTCCAGGTCTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGCGTTGCTGGTGGAGCTTTTATGACCAATCAACCGTGCTTCTCAACTGACATAACTTCCTTAAGCAGGAAAGACTATCCACTGTCTCACCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTGAGAAGCATCCACAGCAGTACAGATGACTTTGTCCTTGAGTTCTTTTTGCCCATAAATTGCATTGACAGTGAGGAACAGAAGAAGATGCTTACATCATTGTCCATGATTATACAGAGGGTTTGCCATGGCTTACGGGTCATAACAGATAAAGAATTGGAGGAAGAAACTAGCTTATCAATTGAAGTGATAGCCCCTGCAGATAGTGGATCTGCTCAGATGGAGCTCCAACAGAGAGGGATGGTTGCCTCATCAGAAACTAAAGAGAAGTCAAGTGAAACAGCGAATAAACAGTTGTCTGACCTTAGGCAGCAAGAAGACTCTATTTTAAAAGGATACCTCGACTGTACCGGGGAGTGTTCTTCTTTTGGTGAGGGTAGCTTACCAATTGTGGGTTTAAGTAAAGTGGGAGATAGAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGTGTTTGTACGACAACTTTGAAAAGAATATGCCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGTCACTCTTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAAATAGATGCCTTCTACTCAAAGTTTTCAGAACTAGCCTCCCCAAATATGCCAGGAAGTAGCTTGATCTCAACTTCAAAGCATAGTGATCATCCAAATCCATCAAGCGCACAGCCTGATCCTGGCTTGCTGAGCCCAGAAGCACCCTCATCTTCGTGCAGTCAGAGTTCCAGCTCAAGCCATTCCTGTTCCAATATGTCAGAGCAACAGCATTACACACAAAATGTTGCTGGTAGCAAAGATCCTAGGGTTGGTGAAGATTCTGCTGATGTGGTGTTGAAGAGGATCAGAAGTGCAGCAGGGCTAAAAAGCTTTAGTCAAGATAGAGCAGAGCTTTTGCCAAGATCCCAAAGCGTGGAAAACCTTGGTGAACATCCAAAGGCTTCATTGAAACACAGGCCCAAAGTACATCAAAGGGAGGGTGCTCACCGTGTAAAAGTCACTTACAGAGATGAGAAAACGCGGTTCCGAATGCCAAATACTTGGGGTTATGAAGATCTTCTGCTGGAAATTGCTCAGCGATTTAACATAGATGATATGACCAAATTTGATATCAAGTATCTGGACGATGACTCTGAATGGGTATTACTAACTTGTGATGCTGATTTAGAAGAGTGCATTGATGTTAGTCAATATTCTCAGAGCAGTACCATCAAGCTTTGCCTCAGTTTCCAGAAGTCTAGGCCTTCTTGA 2640 0.4386 MGDGAVSPGTLLDSSMNFDYMDELFLEGCWLETTTDGSDFLLQSPSTSNPLLDPSISWPALDTNGHGNLEARQSPLFNDLQETRINTRSVGKCKDIINVAGTCNQSEIHSVESSEVARRWWIGPRPNPSPKSSVLERLIKALVYIRDLNRDKDMLLQIWVPINRGGRRILTTSDLPFSLETCYSNLAKYRVISEKYQFSAEEDSKGLVPGLPGRVFTEKVPEWTPDVQFFRSDEYPRVDYAQEYDVRGSLALPIFEQGSRICLGVIEVVMTTQQIKYFPELESVCKALEAVDLRSSKPSSIWNVKTYNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIQQGKEGCRHTDDNFLHCISPVEQACYVGTPTVQVFHEACSEHHLLKGQGVAGGAFMTNQPCFSTDITSLSRKDYPLSHHARIFGLRAAVAIRLRSIHSSTDDFVLEFFLPINCIDSEEQKKMLTSLSMIIQRVCHGLRVITDKELEEETSLSIEVIAPADSGSAQMELQQRGMVASSETKEKSSETANKQLSDLRQQEDSILKGYLDCTGECSSFGEGSLPIVGLSKVGDRRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDAFYSKFSELASPNMPGSSLISTSKHSDHPNPSSAQPDPGLLSPEAPSSSCSQSSSSSHSCSNMSEQQHYTQNVAGSKDPRVGEDSADVVLKRIRSAAGLKSFSQDRAELLPRSQSVENLGEHPKASLKHRPKVHQREGAHRVKVTYRDEKTRFRMPNTWGYEDLLLEIAQRFNIDDMTKFDIKYLDDDSEWVLLTCDADLEECIDVSQYSQSSTIKLCLSFQKSRPS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0030 879 SMART PB1_new 791 874 IPR000270 GO:0005515
Dere04g0030 879 Pfam PB1 domain 792 871 IPR000270 GO:0005515
Dere04g0030 879 Coils Coil 518 538 - -
Dere04g0030 879 CDD PB1_NLP 792 871 IPR034891 -
Dere04g0030 879 Pfam RWP-RK domain 580 628 IPR003035 -
Dere04g0030 879 ProSiteProfiles PB1 domain profile. 791 876 IPR000270 GO:0005515
Dere04g0030 879 PANTHER PROTEIN NLP8 111 871 IPR045012 GO:0003700
Dere04g0030 879 MobiDBLite consensus disorder prediction 512 532 - -
Dere04g0030 879 MobiDBLite consensus disorder prediction 666 726 - -
Dere04g0030 879 MobiDBLite consensus disorder prediction 666 733 - -
Dere04g0030 879 ProSiteProfiles RWP-RK domain profile. 567 648 IPR003035 -
Dere04g0030 879 SUPERFAMILY CAD & PB1 domains 785 872 - -
Dere04g0030 879 MobiDBLite consensus disorder prediction 772 791 - -
Dere04g0030 879 Gene3D - 789 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0030 Dere-ChrDere04 367958 371325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0030 16 871 NLP Transcription Factor Family AT1G20640 48.677 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere04g0030 PB1 1.3e-18 CL0072