Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0027 ATGACAAACCCTCATAACAAATTGTTTCCATATTTTTTTCCTCAAAATTTACGATGCGCAGAGTTAAAATCCCGCCTAAAACCCCTAGTTGATTTCATTTCGAGTGCAATTGAATTTCAATTTCCTTTCAAGGGCTTAATATCTCCGCCTTTCGCCGTCCCAAGCCCTAGTGATACAACTTCTCTTGTTTCCAACTCGTTTCTCTCTCCTTTGGGAACCCTAACCTCCAATTCATCATCCTGGTTCGTAATTTTCGACATGAAAGGTGGCAAATCGAAGACTGAATCTAAGAGAGCCGATGCCAAGCTTGCTGTGAATAAGAAAGGTGGCGCCGCCACCAAGGCTGGCAGAAAATCAAGTAAGGGGAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCGCCCAGTGCCTTCTTTGTGTTCATGGAGGAATTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAATCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGTCGATGTCTGATGCTGAGAAAGCACCTTATGCAGCTAAGGCAGAGAAAAGAAAGGTTGAGTATGAGAAGAATATGAAAGCCTATAACAAGAGACAGGCTGAGGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAATTTCTGAGGTGAATGATGAGGAGGAAGGTGATGAAGAGGGCAGTGACGAGGAGGAGGATGACGAGTAG 723 0.444 MTNPHNKLFPYFFPQNLRCAELKSRLKPLVDFISSAIEFQFPFKGLISPPFAVPSPSDTTSLVSNSFLSPLGTLTSNSSSWFVIFDMKGGKSKTESKRADAKLAVNKKGGAATKAGRKSSKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKSVSAVGKAAGAKWKSMSDAEKAPYAAKAEKRKVEYEKNMKAYNKRQAEGPNAADEEESEKSISEVNDEEEGDEEGSDEEEDDE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0027 240 MobiDBLite consensus disorder prediction 217 240 - -
Dere04g0027 240 MobiDBLite consensus disorder prediction 180 216 - -
Dere04g0027 240 Coils Coil 182 202 - -
Dere04g0027 240 MobiDBLite consensus disorder prediction 95 135 - -
Dere04g0027 240 CDD HMG-box_AtHMGB1-like 132 192 - -
Dere04g0027 240 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 87 235 IPR031061 -
Dere04g0027 240 SMART hmgende2 130 201 IPR009071 -
Dere04g0027 240 MobiDBLite consensus disorder prediction 151 240 - -
Dere04g0027 240 SUPERFAMILY HMG-box 118 206 IPR036910 -
Dere04g0027 240 Gene3D High mobility group box domain 114 221 IPR036910 -
Dere04g0027 240 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 131 200 IPR009071 -
Dere04g0027 240 Pfam HMG (high mobility group) box 131 200 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0027 Dere-ChrDere04 354410 357847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere04g0027 HMG_box 7.6e-24 CL0114