Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0023 ATGTTTGAGTTCCCGGGAGAAAGCAAGAGAAGAAACCCTAAAAAAGGGAAGTTTCAAGACAGAGAGAGCCAAAAAGCTGTTGGAAAGCGGAGATTGGACGATACACAAGAGAAAGAGGGATGCGGCTGGACATCGTCGATTCCCGTTAATCTTCCGACACGTGGACAATCATTATTGGTGGATTGTATTGCCGCTGCTTCCCATCCGTCGGATCGCTTTGCATCAAGGGCCTTCTCTCCCTCTCTGCTTCTCCTGCTAGTCATGGATTTGTTTTGGGTTGTTTCTTGGGTGCTCCTGCTCTTCACAATTCCTCCATATGTGGTCAGCGATAACATATCACGGCCTGCCGTCGTGAACTTTGGAGCTATTTTCTCCTTTGATTCCACTATTGGGAAAGTCGCTAAAATCGCGATAGAGGAAGCGGTGAAGGATGTAAACGCCAACGCTAGCATACTCCATGGAACTAAACTTGCCTTCACAATGCAAAATTCCAATTGCAGTGGTTTCGTGGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTCGTCGCAATATTAGGTCCACAATCTTCCGTTGTTGCTCACATAATATCCCATGTCGCAAATGAGCTCCAAGTCCCTCTGTTGTCGTTTGCGGCAACAGACCCTACACTATCCTCCCTGCAGTTCCCTTTTTTTGTGAGAACAACCCTGAGTGATTTGTATCAGATGACTGCAGTAGCTGAAATTGTTGATCATTATGGTTGGAAGGAGGTCATTGCTATATTTGTAGATGATGATTTTGGACGAAATGGCGTGTCAGCCTTAGATGATAAATTAGCAGCCAGGCGATGCAGAATCTCCTACAAGGCAGGAATAAAGTCAGGACCTGGAGTTGATCGGCAAGAAATCACGGATTTGCTGGTGAAGGTGGCTCTGATGCAATCTCGGGTTATTGTTCTCCATGTAAATCCTGATTCAGGATTTACGGTTTTCAATGTGGCCAAGTTTCTTGGGATGGCAGAAGATGGCTATGTCTGGATAGCCACTGACTGGCTCTCCTCTGTTTTGGATTCTGCTTCTCTCCCTTCAGGCACAATGGATGTTCTACAGGGCGTTCTTGTTTTGCGCCAACATACCCCTGATTCAGATAGAAAAAGAGCATTTCTGTCTAGGTGGAACAAGATCACTGGAGGCTCTATGGGGCTACATTCGTATGGCCTTTATGCATATGATTCTGTTTGGCTGCTTGCACACGCTATTGATGCATTTTTCAACCAGGGTGGGATCGTATCATTTTCTAACGACTCCAGGATACATGATGTTGAGGGAGGTAATCTTAACCTAGACGCAATGAGCATTTTTGACAACGGAACGCTTCTGTTGAAGAACATATTGCAGAGCAACTTTGTTGGTTTAACAGGTCCCATAAAATTCGAGTCAGACAGATCTCTTGTTCGTCCTGCATATGATATTATTAATGTGGTGGGAACTGGGATTCGTCGGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCCATTGTTCCTCCTGAGACATTGTATGCTAAGCCTCCTAATCGCTCAAGTGCAAACCAACAATTGTACAATGTAATATGGCCGGGAGAAACATTATCAAAACCCCGAGGATGGGTTTTCCCAAATAATGGAAAACAATTGAGAATTGGTGTACCTATCCGAGTCAGTTTCCGGGAATTTGTGTCGCCCGTGCAAGGAACTGATATGTTTAAAGGTTTCTGCATTGATGTATTCACAGCAGCTGTAAACTTGTTACCATATGCCGTTCCATATCGCTTTGTCCCATTTGGATATGGTCATAAAAATCCTAGCTACACTGAACTTGTCAACTTGATCTCCACCGGCTACTTTGATGGTGCTGTTGGTGACATTGCCATTGTCACAAACCGGACGAAGATTGTAGATTTTACACAACCATATGCTGCATCTGGACTAGTCGTGGTGGCCCCTTTTAAGAAAACAAACTCTGGTGGTTGGTCTTTTCTGCGGCCATTTACTCCTCTAATGTGGATTGTTACTGCTTCTTTCTTCTTTTTCATTGGGATCGTTGTATGGATTCTGGAGCATAGGATAAATGATGAGTTCAGGGGCCCACCTAAACAACAAATTATAACCATTTTATGGTTTAGCTTGTCAACTCTATTTTTCGCCCACAGAGAGAATACCATGAGTAGTCTTGGTCGCTTGGTGGTAATCATATGGCTGTTTGTGGTTTTAATAATCAACTCCAGCTACACAGCAAGTTTGACATCAATCCTCACAGTGCAGCAGCTATCTTCTCATATCAACGGTATAGATAACTTAAAAGCTGGTGATGAAACCATAGGGTATCAAGTGGGTTCATTCGCAGAACGCTATTTGACTGAGGATATTGGAATATCCAAATCTAGGCTTGTTGCCCTTGGATCTCCCGAAGAATATGCTAAGGCTCTCCAGCTTGGTCCTGACAAAGGAGGTGTTGCTGCTATTGTTGATGAACGACCCTATGTTGAAATATTCTTGTCAACCCAGTGCACGTTCAGGATAGTAGGTCCGGAGTTCACCAGAAGCGGCTGGGGTTTTGCATTCCCACGGGACTCCCCGTTGGCCGTTGATTTGTCTACTGCAATTCTACAGCTTTCTGAAAATGGTGAACTGCAGCGAATTCATGATAAGTGGCTCATACGAAGCTCCTGTAGTTTAGATAATGCTGAAATTGATTCAGACCGGCTTCGGTTCAAAAGCTTCTGGGGTCTCTTTCTTATATGTGGGATTGTTTGCATTGTTGCTCTTTCCATATATTTTTTGCAGATTATGCTGCAGTTACGCCATTCTACTCCTACTCAACCTGCTTCCAATGTGAGCTCACTTTCTGGACGTTTTCAAAGATTTCTTTCACTGATCGACGAGAAGAAAGAGCGGAACAATAACGGCAGTAGAAAGAGGGGTGTAGCCCAAAGGTCTTCAGAAGAAGATGAATTGGGGAGGCAGTTAAAGAGGATACAAACGGAAACATCTGAATTCAACTCTAATCATTAA 3036 0.441 MFEFPGESKRRNPKKGKFQDRESQKAVGKRRLDDTQEKEGCGWTSSIPVNLPTRGQSLLVDCIAAASHPSDRFASRAFSPSLLLLLVMDLFWVVSWVLLLFTIPPYVVSDNISRPAVVNFGAIFSFDSTIGKVAKIAIEEAVKDVNANASILHGTKLAFTMQNSNCSGFVGMVQALRFMETDVVAILGPQSSVVAHIISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTLSDLYQMTAVAEIVDHYGWKEVIAIFVDDDFGRNGVSALDDKLAARRCRISYKAGIKSGPGVDRQEITDLLVKVALMQSRVIVLHVNPDSGFTVFNVAKFLGMAEDGYVWIATDWLSSVLDSASLPSGTMDVLQGVLVLRQHTPDSDRKRAFLSRWNKITGGSMGLHSYGLYAYDSVWLLAHAIDAFFNQGGIVSFSNDSRIHDVEGGNLNLDAMSIFDNGTLLLKNILQSNFVGLTGPIKFESDRSLVRPAYDIINVVGTGIRRVGYWSNYSGLSIVPPETLYAKPPNRSSANQQLYNVIWPGETLSKPRGWVFPNNGKQLRIGVPIRVSFREFVSPVQGTDMFKGFCIDVFTAAVNLLPYAVPYRFVPFGYGHKNPSYTELVNLISTGYFDGAVGDIAIVTNRTKIVDFTQPYAASGLVVVAPFKKTNSGGWSFLRPFTPLMWIVTASFFFFIGIVVWILEHRINDEFRGPPKQQIITILWFSLSTLFFAHRENTMSSLGRLVVIIWLFVVLIINSSYTASLTSILTVQQLSSHINGIDNLKAGDETIGYQVGSFAERYLTEDIGISKSRLVALGSPEEYAKALQLGPDKGGVAAIVDERPYVEIFLSTQCTFRIVGPEFTRSGWGFAFPRDSPLAVDLSTAILQLSENGELQRIHDKWLIRSSCSLDNAEIDSDRLRFKSFWGLFLICGIVCIVALSIYFLQIMLQLRHSTPTQPASNVSSLSGRFQRFLSLIDEKKERNNNGSRKRGVAQRSSEEDELGRQLKRIQTETSEFNSNH 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0023 1011 Gene3D - 233 506 - -
Dere04g0023 1011 Pfam Receptor family ligand binding region 136 491 IPR001828 -
Dere04g0023 1011 FunFam Glutamate receptor 548 663 - -
Dere04g0023 1011 Gene3D - 841 900 - -
Dere04g0023 1011 MobiDBLite consensus disorder prediction 1 39 - -
Dere04g0023 1011 FunFam Glutamate receptor 790 897 - -
Dere04g0023 1011 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 118 960 IPR015683 -
Dere04g0023 1011 PIRSF IGluLR_plant 88 1011 IPR017103 -
Dere04g0023 1011 Gene3D - 136 481 - -
Dere04g0023 1011 PRINTS Metabotropic glutamate GPCR signature 186 212 IPR000337 GO:0004930|GO:0007186|GO:0016020
Dere04g0023 1011 PRINTS Metabotropic glutamate GPCR signature 218 237 IPR000337 GO:0004930|GO:0007186|GO:0016020
Dere04g0023 1011 PRINTS Metabotropic glutamate GPCR signature 253 270 IPR000337 GO:0004930|GO:0007186|GO:0016020
Dere04g0023 1011 PRINTS Metabotropic glutamate GPCR signature 237 253 IPR000337 GO:0004930|GO:0007186|GO:0016020
Dere04g0023 1011 MobiDBLite consensus disorder prediction 1 38 - -
Dere04g0023 1011 MobiDBLite consensus disorder prediction 974 999 - -
Dere04g0023 1011 CDD PBP1_GABAb_receptor_plant 119 510 IPR044440 -
Dere04g0023 1011 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 131 147 - -
Dere04g0023 1011 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 404 416 - -
Dere04g0023 1011 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 191 219 - -
Dere04g0023 1011 CDD GluR_Plant 551 893 - -
Dere04g0023 1011 SMART GluR_14 554 895 IPR001320 GO:0015276|GO:0016020
Dere04g0023 1011 MobiDBLite consensus disorder prediction 974 1011 - -
Dere04g0023 1011 FunFam Glutamate receptor 664 794 - -
Dere04g0023 1011 Pfam Bacterial extracellular solute-binding proteins, family 3 575 893 IPR001638 -
Dere04g0023 1011 Gene3D - 663 795 - -
Dere04g0023 1011 SUPERFAMILY Periplasmic binding protein-like I 113 544 IPR028082 -
Dere04g0023 1011 Gene3D - 548 662 - -
Dere04g0023 1011 Pfam Ligand-gated ion channel 894 925 IPR001320 GO:0015276|GO:0016020
Dere04g0023 1011 FunFam Glutamate receptor 233 388 - -
Dere04g0023 1011 SUPERFAMILY Periplasmic binding protein-like II 530 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0023 Dere-ChrDere04 324809 330890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0023 114 1009 Ion Channels AT1G42540 66.520 0.0 1251