Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2752 ATGCCTATAATTAGGAACATAATTCAGGATATGAGAACGAGGTCGCAACCGGTGGTGCGGGACGGTCCGCTGGAGGTGATCATCGCCGATGGCCTGAAGCAGAGCTGCTGGGCTAACATGCCAATGGAGCTGCTGAGAGAGGTATTGACGAGAATTGAAGCATCTGAGAGCTCTTGGCCGCCTCGCAAGAGTGTGGTGGCTTGTGCAGGCGTGTGCCGGAGTTGGAGGCACATCACCAAGGACATCGTCAAGACACCTGATGTTTCCGCTAAGATCACGTTCCCCATCTCTGTCAAGCAGCGTGGCCCAAGAGAGAATCTCCTCCAGTGCTTTATAAAGCGCAACCGGTCGACTCAAACATATTATCTGTTTCTCAGTTTAACTGATGCATTAGGAGATGCTGGGAAGTTCCTTCTGGCGGCACGCAAGAGTAGACATCCCACCTGCACGGATTATATCATCTCTCTAGATGCTGATGATATATCAAAGGGAAGCAAAACTTATGTCGGGAAACTGAGGGGCCCAAGGAGAATGAAATGTGTCATGGATGTTATTCCTACCTGTGCAATTGAACCAGGAGGGGTAGCCCCTATACTGACCGAGTTTTCTCTTAGTAATGTAGAAAAGCTCCCTGCATTCCCATTTTTCCGGTCAAAATCAAATCCGATTGCAAACTCCATATCTGGACCCCTGGGCAATGATGGGGTGCTAGTATTAAAAAGCAAGGCTCCCAGGTGGCATGAGCAGCTCCAATGTTGGTGTTTAAACTTTAATGGAAGAGTGACAGTTGCATCGGTTAAAAACTTTCAGCTGGTGGCTTCTCCAGAAAATGGACCATCTGGAGCAGAACATGAGAAGATCATCCTCCAATTTGGAAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATGTCAGCATTTCAGGCATTTGCAATTTGCCTCAGCAGCTTTGATACCAAAATTGCTTGTGAATGA 984 0.4746 MPIIRNIIQDMRTRSQPVVRDGPLEVIIADGLKQSCWANMPMELLREVLTRIEASESSWPPRKSVVACAGVCRSWRHITKDIVKTPDVSAKITFPISVKQRGPRENLLQCFIKRNRSTQTYYLFLSLTDALGDAGKFLLAARKSRHPTCTDYIISLDADDISKGSKTYVGKLRGPRRMKCVMDVIPTCAIEPGGVAPILTEFSLSNVEKLPAFPFFRSKSNPIANSISGPLGNDGVLVLKSKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPENGPSGAEHEKIILQFGKVGKDLFTMDYQYPMSAFQAFAICLSSFDTKIACE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2752 327 Gene3D - 30 84 - -
Dere03g2752 327 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Dere03g2752 327 CDD F-box_AtTLP-like 37 81 - -
Dere03g2752 327 SUPERFAMILY Tubby C-terminal domain-like 86 327 IPR025659 -
Dere03g2752 327 Gene3D Tubby Protein; Chain A 93 173 IPR025659 -
Dere03g2752 327 Gene3D Tubby Protein; Chain A 174 327 IPR025659 -
Dere03g2752 327 ProSitePatterns Tub family signature 2. 312 327 IPR018066 -
Dere03g2752 327 PANTHER TUBBY-RELATED 173 325 - -
Dere03g2752 327 Pfam Tub family 173 322 IPR000007 -
Dere03g2752 327 PRINTS Tubby superfamily signature 157 184 IPR000007 -
Dere03g2752 327 PRINTS Tubby superfamily signature 305 327 IPR000007 -
Dere03g2752 327 PRINTS Tubby superfamily signature 239 256 IPR000007 -
Dere03g2752 327 PRINTS Tubby superfamily signature 284 303 IPR000007 -
Dere03g2752 327 PRINTS Tubby superfamily signature 257 273 IPR000007 -
Dere03g2752 327 Pfam F-box domain 37 84 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2752 Dere-ChrDere03 43046820 43049882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2752 12 327 TUB Transcription Factor Family AT2G47900 54.663 1.46e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere03g2752 Tub 2.7e-54 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2752 03 43046820 43049882 Dere03g2752 03 43046820 43049882 ECH