Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2742 ATGAATATAGAGGAGGGGAAGTGACTTTTGTGGACCTTTCCCTGGAGTGATCTTCAACTGCTGGTTTTGGTTGGTAGTATCTCTGGACTTTTGCCCGTTTATTTATCTATGAAAGTAAATGCCAATTTCTTTAGCATCCCAATCCGACATTTCTGGATTCATGCAAACGCAAGCGAGGAACATCGGTATAATTCTGCACGGCAACTGCTTGTTAAAATGCCCATAACGGTTTTCCCATCTCTGAACTCCCATTGGCCGATCTTTCGACAAGCCAAACCAGCAGATCTTCCCAAATCAAGAAACTCCATTCATTCCCCTCCCCTCTCTTCTGAGAGAGAAAAAGAGCTTTCTGCCCTTTCCTCTCTTCCAAAACTCATGGAAGGCTATAACATTGAACGTCTTGGTTTTGGGAAGATGGGATACGGGTGCAAGCATTACAGGAGAAGATGCATGATTCGGGCTCCATGCTGCAACGAGATATACTACTGCCGTCATTGTCATAACGAGGCAGTGAGCATGTTGAAGAATCCCTTTGATCGACACGAAGTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCAGTTGCCCAAGTGTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATATGCAAATTCTTCGATGATGATACGGAGAAACAGCAGTTTCATTGTGATGATTGTGGGATCTGCAGAATAGGCGGTCGTGAGAACTATTTCCACTGCCAGAAGTGCGGGTCTTGCTATTCAATTGGTCTACTTGATAATCATTTATGTGTGGAGGACTCCATGAGGCATCACTGTCCTATTTGTTATGAGTACCTTTTTGATTCAGTGAAAGATACCACCGTTATGAAATGTGGTCACACAATGCATTGTGAATGTTTCCAAGAGATGATAAAGCGTGACAAGTATTGTTGCCCCCTATGCTTCAAGTCAGTGATTGACATGTCTAGGATCTGGAAGATGATTGACGAAGAGATTGAAGCAACTCTCATGCCTGAGGATTATAGGCACAGGAAGATTTGGATACTATGTAATGACTGCAATGACACAACTGAAGTTTACTTCCACGTAATTGGGCAAAAATGTGGCCACTGCAGATCATACAATACTCGTGAAATTGCTCCTCCAGTTCTTCCTCAATGA 1179 0.4309 MNIEEGKXLLWTFPWSDLQLLVLVGSISGLLPVYLSMKVNANFFSIPIRHFWIHANASEEHRYNSARQLLVKMPITVFPSLNSHWPIFRQAKPADLPKSRNSIHSPPLSSEREKELSALSSLPKLMEGYNIERLGFGKMGYGCKHYRRRCMIRAPCCNEIYYCRHCHNEAVSMLKNPFDRHEVVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRIGGRENYFHCQKCGSCYSIGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHCECFQEMIKRDKYCCPLCFKSVIDMSRIWKMIDEEIEATLMPEDYRHRKIWILCNDCNDTTEVYFHVIGQKCGHCRSYNTREIAPPVLPQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2742 392 SMART ring_2 278 320 IPR001841 -
Dere03g2742 392 SUPERFAMILY CHY zinc finger-like 141 212 IPR037274 GO:0008270
Dere03g2742 392 CDD RING-H2_Pirh2-like 277 320 - -
Dere03g2742 392 ProSiteProfiles Zinc finger RING-type profile. 278 320 IPR001841 -
Dere03g2742 392 ProSiteProfiles Zinc finger CTCHY-type profile. 213 277 IPR017921 -
Dere03g2742 392 SUPERFAMILY RING/U-box 277 327 - -
Dere03g2742 392 Pfam Zinc-ribbon 325 383 IPR039512 -
Dere03g2742 392 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 118 388 - -
Dere03g2742 392 Gene3D - 352 387 - -
Dere03g2742 392 ProSiteProfiles Zinc finger CHY-type profile. 136 211 IPR008913 GO:0008270
Dere03g2742 392 Pfam Zinc finger, C3HC4 type (RING finger) 278 320 IPR018957 GO:0046872
Dere03g2742 392 SUPERFAMILY Zinc hairpin stack 214 271 IPR037275 -
Dere03g2742 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 351 IPR013083 -
Dere03g2742 392 Pfam CHY zinc finger 143 223 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2742 Dere-ChrDere03 42945013 42953076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2742 138 391 C2H2 Transcription Factor Family AT3G18290 39.768 2.40e-55 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2742 03 42945013 42953076 Dere03g2742 03 42945013 42953076 ECH