Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2738 ATGGCTAGGCCTTCAAAGCCTAGGGCATCTTCCGACGAAGAACTATCGAACGCTTCGAGTTCGTCGGAGGAGGAGCAGGTCAACGAGCAGATCAACGATGAGGAGGACGAGGAGGAGCTGGAAGCGGTGGCTCGCTCCGCCAGCTCCGACGACGAGGAAGCCGCTGATGATAATTCGCCCGATTTCGACGGAGATGCACCCGCTGGAGATGGCGATGAGGAGGAACAGGATGGAGGTAATGTCGATCCGGAAATTAGTAAGCGTGAAAAGGCCAGATTGAACGAAATGCAGAAGCTGAAGAAACAAAAGATTCAGGAGATGCTGGATGCGCAAAATGCTGCCATTGATGCTGATATGAACAACAAGGGAAAAGGTCGATTGAAGTATCTCTTACAGCAAACTGAAATTTTTGCACATTTTGCAAAAGGCGATCAATCTTCTCAAAAGAAGTCAAAAGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATATCTTAAAGAAGAAGAAGATGGATTAGGAAACACACGACTGGTGACACAACCATCATGTATCCAAGGGAAGTTGAGGGATTACCAACTTGCTGGCCTAAACTGGCTTATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCGGATGAGATGGGGCTTGGCAAAACATTGCAAACTATCTCCCTATTGGGCTATTTGCATGAGTTTAGAGGAATAACAGGCCCTCACATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTAGGCGCTTTTGTCCCATCTTGCGGGCTGTGAAGTTCCTTGGCAATCCTGATGAAAGGAGACATATTAGGGAGGATTTATTAGTTGCTGGGAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGTTTTAGTTGGCGTTTCATTATTATAGATGAAGCTCATCGGATCAAGAATGAAAATTCCCTCCTTTCCAAAACGATGAGGCTCTACAATACAAACTATCGCCTCCTTATCACTGGTACACCACTTCAGAACAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTTCCAGAAATATTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGACAATGACCAGCAGGAGGTTGTTCAACAACTGCACAAGGTGCTACGCCCTTTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCCAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAGGGCATTACTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGAGAACGGAAGCGACTCCTCAATATAGCCATGCAACTCCGTAAATGTTGTAATCACCCATACCTTTTCCAAGGTGCTGAACCTGGTCCGCCCTATACAACAGGGGAGCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTAGACAAACTACTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACAAGGCTGCTAGACATACTTGAAGACTATTTGATGTTTCGTGGGTATCAATATTGTCGCATTGATGGTAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAAGTTTTTAACAAACCAGGGAGTGAGAAATTTATCTTCTTGTTATCGACTCGTGCTGGAGGTCTTGGCATTAACCTTGCCACTGCTGACGTTGTCATCCTTTACGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGACCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGTATACGATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCCCTCGATGCTCTGGTGATTCAGCAAGGACGATTGGCAGAGCAGAAAACTGTAAATAAAGATGAGTTGCTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCTAAGGATAGTACAATTACCGATGAGGATATTGACAGGATTATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGTCAAGATGAAGAAATTTACTGAAGATGCTATAAAATTTAAAATGGATGACACTGCTGAGTTGTATGATTTTGATGACGAGAAGGATGAGAGCAAAGTTGATTTCAAAAAAATTGTAAGCGAGAACTGGATTGAGCCGCCTAAAAGAGAGCGGAAGCGCAACTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGCCAAGGTGGACCTACAAAACCAAAGGAGCCTCGTATTCCTAGGATGCCTCAGTTGCATGATTTCCAGTTCTTCAACACACAAAGGCTGAGCGAGCTGTATGAAAAGGAAGTGCGCTATCTCATGCAAACACATCAAAAGAATCAGTTAAAGGACTCTATAGATGTTGATGAACCTGAAGAGGTGGGAGATCCATTAACTGCTGAAGAGCTGGAAGAAAAGGAGCGCTTGCTGGAGGAGGGATTTTCTTCATGGAGCCGTAGGGATTTTAACACTTTCATTAGAGCCTGTGAAAAGTATGGCCGGAATGATATAAAGAATATTGCTTCTGAGATGGAAGGGAAATCAGAGGTGGAAGTTGAAAGATATGCGAGGGTTTTCAAAGAAAGATATAAGGAACTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGAGAGGCTAGAATTTCTCGAAAAGATGAGATCATGAAAGCTATTGGCAAGAAGTTGGACCGATACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTACGGGAATTGGGATGAGTTGAAGGCGGCATTTCGTACATCACCCTTATTCCGTTTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTTGCAAGGAGATGTGATACCCTTATTAGGTTGGTAGAGAAGGAAAACCAAGAATACGACGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAGCATGACCCCATCAAAACGGGCCTTGGCTAGACAGACTGACAGTCCATCTTTGCTGAAGAAGCGCAAGCAGTTAACTATGGATGACTATGTTAGCACGGTTAGCTTATTCTTTTTGCAGAATTTGAATTGTAATACTGTTTTTATTACGTAG 3246 0.4245 MARPSKPRASSDEELSNASSSSEEEQVNEQINDEEDEEELEAVARSASSDDEEAADDNSPDFDGDAPAGDGDEEEQDGGNVDPEISKREKARLNEMQKLKKQKIQEMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDQSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLGNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRHIREDLLVAGKFDVCVTSFEMAIKEKSALRRFSWRFIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEVFNKPGSEKFIFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDVKMKKFTEDAIKFKMDDTAELYDFDDEKDESKVDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKNIASEMEGKSEVEVERYARVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTDSPSLLKKRKQLTMDDYVSTVSLFFLQNLNCNTVFIT 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2738 1081 CDD SF2_C_SNF 495 620 - -
Dere03g2738 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 409 IPR027417 -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 11 26 - -
Dere03g2738 1081 Pfam HAND 758 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Dere03g2738 1081 SUPERFAMILY Homeodomain-like 900 1022 IPR009057 -
Dere03g2738 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 693 IPR027417 -
Dere03g2738 1081 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Dere03g2738 1081 MobiDBLite consensus disorder prediction 747 774 - -
Dere03g2738 1081 Coils Coil 1002 1029 - -
Dere03g2738 1081 ProSiteProfiles SANT domain profile. 844 896 IPR017884 -
Dere03g2738 1081 Gene3D - 933 1036 - -
Dere03g2738 1081 Coils Coil 86 113 - -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 27 41 - -
Dere03g2738 1081 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 845 899 - -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 142 175 - -
Dere03g2738 1081 Gene3D - 195 410 IPR038718 -
Dere03g2738 1081 Gene3D - 415 707 IPR027417 -
Dere03g2738 1081 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Dere03g2738 1081 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 757 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dere03g2738 1081 FunFam ISWI chromatin-remodeling complex ATPase CHR11 746 844 - -
Dere03g2738 1081 Pfam SLIDE 902 1012 IPR015195 GO:0003677|GO:0005634|GO:0006338
Dere03g2738 1081 Gene3D ISWI, HAND domain 746 844 IPR036306 GO:0003677|GO:0006338|GO:0031491
Dere03g2738 1081 Gene3D - 845 899 - -
Dere03g2738 1081 SMART ultradead3 190 382 IPR014001 -
Dere03g2738 1081 FunFam ISWI chromatin-remodeling complex ATPase CHR11 933 1036 - -
Dere03g2738 1081 Coils Coil 17 37 - -
Dere03g2738 1081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 1 96 - -
Dere03g2738 1081 CDD SANT 848 892 IPR001005 -
Dere03g2738 1081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Dere03g2738 1081 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 182 1051 - -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 1027 1047 - -
Dere03g2738 1081 SUPERFAMILY Homeodomain-like 848 898 IPR009057 -
Dere03g2738 1081 SMART sant 845 894 IPR001005 -
Dere03g2738 1081 SMART sant 947 1008 IPR001005 -
Dere03g2738 1081 SMART helicmild6 525 609 IPR001650 -
Dere03g2738 1081 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Dere03g2738 1081 Gene3D iswi atpase 900 932 - -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 80 96 - -
Dere03g2738 1081 FunFam Chromatin-remodeling complex ATPase 195 410 - -
Dere03g2738 1081 MobiDBLite consensus disorder prediction 145 165 - -
Dere03g2738 1081 FunFam ISWI chromatin-remodeling complex ATPase CHR11 415 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2738 Dere-ChrDere03 42900772 42910746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2738 186 636 RAD5 or RAD16-like Gene Family AT1G02670 26.729 4.09e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere03g2738 SNF2_N 7.4e-71 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2738 03 42900772 42910746 Dere03g2738 03 42900772 42910746 ECH