Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2730 ATGGAATCGTCGTATCGTCGGCGAACCACACGGCGGAGAAGGGAGCAGGAGAAGCTTGTGCGGGCGGTAATTTGGCCTTCAATTCGGGGGCATAGTTGTCCGATATGTTACAGGGACCTCGAAGATAATTACAGAGAAGCTGCAATTCTCACGGTGTGTATGCACGCGTACTGCATCGGATGCATTCGCAAATGGAGTAACTTGAAAAGAAAGTGTCCGCTTTGTAATGCAAACTTCAATTCTTGGTTCTGTAAGCTCAGTCTTTCCTCTAAAGAGTTACAGAAGGAGGTTTTACCCTTTGAGGATTTGACCAGAGAATCTCATCAAGAAATTAATGCAAGCCATGTAGATGCTCGCAGACTTCTTCGTAGAACAAGAGTTGCTTTAGAGGAAAGGCGAACTAGGGCGTTGCCGTGGCGGCGATCATTTGGACGGCGTGGACTTGTGAGTCCAGATGTTATTGCTCAAAGGAAACTTGAGTGGCGTGCTAGCATATACAACCAGCGGCTGCAAGCAGTTCCTTCAACCTTAAGCTGTTTTGAGCAGATTAATTTGAGAAATAGTTCTGTAAAAGATAAAATGCTACACAAGATTGAGCCATGGATACGGAGGGAGCTACAAGCTGTGCTGGGGGACCCCGATCCAATTGTCATTGTTCATGTGGCAACCTCACAGTACTTTGCATGGCTGGAAGAGAAAGCTAACTTACCCTCCAGACAGTTTGATATTGAAGATAGGTTTATATCACCTCTGCGTCCTTTCCTGCTAGATAAAGCTAGTACATTTTGGCATGAACTAAGATGTTTTGCAGAGAGTTGTTACAATATTGAAACATATGATGCAGTAGTTGAATACAAAAATCGGGAGTGA 870 0.446 MESSYRRRTTRRRREQEKLVRAVIWPSIRGHSCPICYRDLEDNYREAAILTVCMHAYCIGCIRKWSNLKRKCPLCNANFNSWFCKLSLSSKELQKEVLPFEDLTRESHQEINASHVDARRLLRRTRVALEERRTRALPWRRSFGRRGLVSPDVIAQRKLEWRASIYNQRLQAVPSTLSCFEQINLRNSSVKDKMLHKIEPWIRRELQAVLGDPDPIVIVHVATSQYFAWLEEKANLPSRQFDIEDRFISPLRPFLLDKASTFWHELRCFAESCYNIETYDAVVEYKNRE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2730 289 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Dere03g2730 289 SMART ring_2 33 75 IPR001841 -
Dere03g2730 289 SUPERFAMILY RING/U-box 28 82 - -
Dere03g2730 289 Pfam Ring finger domain 32 76 IPR001841 -
Dere03g2730 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 6 288 - -
Dere03g2730 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 138 IPR013083 -
Dere03g2730 289 ProSiteProfiles Zinc finger RING-type profile. 33 76 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2730 18 266 C3H Transcription Factor Family AT2G39100 48.819 3.96e-72 221