Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2723 ATGGAGCGGTACGGCCGGGCTAGCGACGAGTCGCAGTCCGATCCGTCACCGGAATGGACCGGAACCGGAGGCGAAACGGGGCTTGAAGAGTCTTTGTGGCGGATGGGATTGGGTGGTGGGGAATCGTATCCGCAACGGCCCGATGAGGCTGATTGTATCTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCGTGACCGTGCCGCGATTATTGGAGCTTCAAGGACTGGAGGGGAGTATCCAGAGCGAGTAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGAGTTTCATGCAAGTACCACCATCCTAGGCAGGGAGGAGGCACTGTTGCCCCTGTGTTGCTTAATTATTATGGATATCCATTAAGACCGGGTGAGAAAGAGTGCTCCTATTATGTGAAAACAGGGCAATGCAAGTTTGGTACAACTTGTAAATTTCATCACCCACAGCCTGCCGGTGTTCAAGTTCCTGCACCTTCACCGGTTCCCCCAGTTTCACCTCTACCTGTACGAGTACCTTCACCATTATATCCTACTGTACAGCCTCCATCTGGTCCTTCATCACAACAATACGGTGTTATGGTTGCAAGGCCACCTCTACTACCCGGCTCATTAGTCCAAAGTCCTTATGGGCCTGTGGTATTGTCCCCTGTCCCTCTTTCAGGTTGGAACCCTTATCAGGCTCCTACAAGCCCTGTAGTTCCCTCTAGTACTCCATCTAATGTTGGTTCAACACAGTTTTATGGGAATATTCAGCTACCTTCATCAGCACCTGGCTATACTGCACCTTATCAACCTACAGGTCCTTCAGGCAGTAGTCAGAGAGAACACTCACTTCCAGAAAGACCTGGTCAACCAGAATGTCAGCATTACATGAAAACAGGGGAATGTAGATTTGGTCCTTCTTGTAGATATCATCATCCGCCTGAATTAATTGCACCAAATATGAATGTGGCCCTTAGTCCTTTGGGTCTTCCTTTGCGCCCGGGAGCACCACCTTGCACTCATTATGCACAGCGTGGAATATGCAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGAAGCATTGAGTTATAGTCCATCTACCACTTCCCCTACTGCTATGCCAGTTGCACCCTATCCTGTGGGTTCATCAGTCAGTATTCGGGCTCCATCATCGTCATCATCAGAGTTGCGGCCTGAACTTACCTCAGGATTTAGCAAGGAGTCTGTATCATCCAGAATGTCTTCATCAATGAGCGCATCCACTGGATCAGTTGGCTTGACTTTGTCAACTGGTGGAACCATTTCTCAATCAAGTGCTCAAACATCCACCCAGAGTTCTGCTCATTTAGTGACTACCACTAGTACTGCAAGCAGCATCATCTCTCATACCTCAAGCTAA 1431 0.4885 MERYGRASDESQSDPSPEWTGTGGETGLEESLWRMGLGGGESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRAAIIGASRTGGEYPERVGQPVCQYYMRTGSCKFGVSCKYHHPRQGGGTVAPVLLNYYGYPLRPGEKECSYYVKTGQCKFGTTCKFHHPQPAGVQVPAPSPVPPVSPLPVRVPSPLYPTVQPPSGPSSQQYGVMVARPPLLPGSLVQSPYGPVVLSPVPLSGWNPYQAPTSPVVPSSTPSNVGSTQFYGNIQLPSSAPGYTAPYQPTGPSGSSQREHSLPERPGQPECQHYMKTGECRFGPSCRYHHPPELIAPNMNVALSPLGLPLRPGAPPCTHYAQRGICKFGPACKFDHPMEALSYSPSTTSPTAMPVAPYPVGSSVSIRAPSSSSSELRPELTSGFSKESVSSRMSSSMSASTGSVGLTLSTGGTISQSSAQTSTQSSAHLVTTTSTASSIISHTSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2723 476 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Dere03g2723 476 MobiDBLite consensus disorder prediction 397 476 - -
Dere03g2723 476 PANTHER PROTEIN PHOSPHATASE RELATED 36 390 - -
Dere03g2723 476 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Dere03g2723 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Dere03g2723 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Dere03g2723 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Dere03g2723 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Dere03g2723 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Dere03g2723 476 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Dere03g2723 476 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Dere03g2723 476 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Dere03g2723 476 Gene3D - 43 120 - -
Dere03g2723 476 Gene3D - 291 382 - -
Dere03g2723 476 MobiDBLite consensus disorder prediction 272 293 - -
Dere03g2723 476 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Dere03g2723 476 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Dere03g2723 476 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Dere03g2723 476 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Dere03g2723 476 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Dere03g2723 476 MobiDBLite consensus disorder prediction 1 26 - -
Dere03g2723 476 MobiDBLite consensus disorder prediction 272 303 - -
Dere03g2723 476 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Dere03g2723 476 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Dere03g2723 476 MobiDBLite consensus disorder prediction 244 263 - -
Dere03g2723 476 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Dere03g2723 476 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Dere03g2723 476 Gene3D - 121 172 - -
Dere03g2723 476 SUPERFAMILY CCCH zinc finger 346 372 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2723 Dere-ChrDere03 42628791 42634855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2723 1 438 C2H2 Transcription Factor Family AT5G18550 57.930 3.38e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere03g2723 zf-CCCH 1.4e-08 CL0537