Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2716 ATGGTGGATAACCTGGGAGGTAGTTCGTCATCCAGTGTTGACATGATGAAGGAACAAGACCGGCTGTTGCCAATAGCCAATGTTGGTCGGATTATGAAGCAAATATTGCCGCAGAATGCGAAGATCTCGAAGGAAGCGAAGGAGACGATGCAGGAATGCGTGTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAATGGTGATGACATATGCTGGGCTTTGGGAACTCTAGGTTTTGATGATTACGCGGAGCCGCTTAAAAGGTATTTGCATAGATATAGAGAGCTTGAGGTTGATCATAGAGTCCATCATCAAGAACGAGAAGGACCATGA 369 0.4851 MVDNLGGSSSSSVDMMKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTGEASDKCRKERRKTVNGDDICWALGTLGFDDYAEPLKRYLHRYRELEVDHRVHHQEREGP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2716 122 Gene3D Histone, subunit A 11 121 IPR009072 GO:0046982
Dere03g2716 122 FunFam Nuclear transcription factor Y subunit B-3 11 122 - -
Dere03g2716 122 SUPERFAMILY Histone-fold 19 117 IPR009072 GO:0046982
Dere03g2716 122 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Dere03g2716 122 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Dere03g2716 122 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Dere03g2716 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere03g2716 122 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere03g2716 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2716 Dere-ChrDere03 42426181 42426549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2716 15 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.353 1.93e-60 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere03g2716 CBFD_NFYB_HMF 1.7e-27 CL0012