Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2715 ATGTTTAATTTTCAACGTCACAGGGCCCTTCTATGCCTGAAGGGTATCGCTCGAACATCGCCAACCTCACAGTGCTTTCCTCTTTCGCAACACTACCCATCGCTAGCATTCTCTCTCAAATACGGCACAAGTGATTCTTCAGGTAATCACTCTTTTACTGTATCATACCTCATAAACAAGTTCGGCTTTTCCCCAGAAGTAGCTTTACATGCTTCCAAGAGAGTTCGATTTGAGACCTCACAAAAGCCAGATTCAGTGGTTAGCTTCCTCGTAAGCCGCGGTTTCCCTAAGTCTAATATAAACAATCTCGTTAGAATGGACTCATCGCTGCTTTTGTGCGATCCCCACAAAAGGATTCTACCCAAGTTAGAATTTTTCCTCTCAAAAGGTGCTTCTACCTCCGACATTGTCTTAATGTTGAGTAGGAGCCCCAGATTCCTAAATAGAAGCTTGAAGAGTCACATAATCCCATCATATGAGTTGCTAAAAGAGTTTTTCCAATTTGATACGGCCACCATCGATTGTATTAAGCGCTATCCAGATTTGCTTTATGACAGTCGTGTGACACAAAGTATCAACATGTTACTTAAGAATGGAGTGTCTGGGTCAAATATTGCTCTCATGCTTGAAAGGAGGCCTCGTACTCTACACTCTCCGAATGACCTTTCAAAGGCGATAGAGGAAGTTAAGCGTTTGGGATTTAATCCTTTGTATACACCATTCGGTGTAGCATTGATAGCCATAAGGAGTGTAAGCAAGTCCCAGTGGGAAGACAAAGTTAATGTCTATAAGAGGTGGGGCTGGTCCGAAGAAGCATTGATGGAAGCATTTAGGAGGCAACCGCATTGTATGTTAGCATCCAAGGAGAAAATTGATGCAGTGTTGAGTTTTTGGGTCAACCAGTTGGGTTGGAATTCTTTGATCCTTGTCAGAGGATCGAAAGTCTTTGGATATAGCTTGAAGAAAAGGATTATTCCAAGGGCTTTAGTTTTGCAGTTTCTTCACTCAAAAGGTTTGAGAAACACGAATGCTAGCTTAATCGCGCCATTTGATATTCCTGAAAAGCGTTTCCTGGAAAAGTTTGTGAAATGTTTTGGGGAGCACTATAATCAGCTATTTAAGCTGTATGAAGAAAATATGAACATCTAA 1149 0.4151 MFNFQRHRALLCLKGIARTSPTSQCFPLSQHYPSLAFSLKYGTSDSSGNHSFTVSYLINKFGFSPEVALHASKRVRFETSQKPDSVVSFLVSRGFPKSNINNLVRMDSSLLLCDPHKRILPKLEFFLSKGASTSDIVLMLSRSPRFLNRSLKSHIIPSYELLKEFFQFDTATIDCIKRYPDLLYDSRVTQSINMLLKNGVSGSNIALMLERRPRTLHSPNDLSKAIEEVKRLGFNPLYTPFGVALIAIRSVSKSQWEDKVNVYKRWGWSEEALMEAFRRQPHCMLASKEKIDAVLSFWVNQLGWNSLILVRGSKVFGYSLKKRIIPRALVLQFLHSKGLRNTNASLIAPFDIPEKRFLEKFVKCFGEHYNQLFKLYEENMNI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2715 382 SMART mt_12 206 235 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 SMART mt_12 137 169 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 PANTHER CGI-12 PROTEIN-RELATED 50 364 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 FunFam Mitochondrial transcription termination factor-like 151 369 - -
Dere03g2715 382 Gene3D Transcription termination factor 3, mitochondrial 169 375 IPR038538 -
Dere03g2715 382 Pfam mTERF 88 294 IPR003690 GO:0003690|GO:0006355
Dere03g2715 382 Pfam mTERF 185 357 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2715 Dere-ChrDere03 42413766 42414914 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere03g2715 mTERF 1.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2715 03 42413766 42414914 Dere03g2715 03 42413766 42414914 ECH