Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2663 ATGGACGCCAAGCAAGATCGCAATCTCAATCTCTATGAAGCCAAGTCCAATGCCCTCACCGGCAACATCATGCTCATCGCCATTGTCATTTTGACCTTCGTCGTCATTCTTTTGATCTGCCTCCACATGTACGCACGCTGGTACCTCCGCCGTGCTCGCCGCCGTCACCGCCGCACTTATCTCGTCTTCTACGTCGACTCCCTCACCCCAAACGCGCCCTCGCGCGGTCTCGATCCCTCTGTGATTCAATCTCTTCCTATCTTTGTCTATACCTCCGACACTCACCCCCACTCTGACCTCGTCGAATGCGCCGTCTGCTTGTCGGAGTTCCAAGAGAACGAAACGGGTCGGATTTTGCCCAACTGCAACCACAGCTTTCACGTTGAATGCATCGACATGTGGTTCCAATCCCACTCCACTTGCCCACTGTGTAGATCTTTGGTTGAACCCGCACCGCCCGTGGACCGACGATCCGAAGTGGTGATCGATGTGTGTGACCCGGCGAGCACTGAAACGGATTCGGGTACGGAGTGTCACCACGATGGGGAAGAAGAAAACCAAACCTGCCGGACGGTTTGCTCTTCGTCGTCTACGATTGGGTTGAGGCGGAAGCCGTCGTCCGTGGGAGTGACCATTGAGGTGCCCTTGAGCAGGAGCTCCGGGAGAGAGGTGGACTCGTCGCCGACGTCGTTTAGGTCGTCGGTGAGTCATTTAATGTCGACATCATTCAAGAGAATACTGAGCCCAGAGAGGAAAGCAAGCCTTTCCTCTCCATCGTCGGATGCAGCTCCTCGACCGAGTTAG 804 0.5547 MDAKQDRNLNLYEAKSNALTGNIMLIAIVILTFVVILLICLHMYARWYLRRARRRHRRTYLVFYVDSLTPNAPSRGLDPSVIQSLPIFVYTSDTHPHSDLVECAVCLSEFQENETGRILPNCNHSFHVECIDMWFQSHSTCPLCRSLVEPAPPVDRRSEVVIDVCDPASTETDSGTECHHDGEEENQTCRTVCSSSSTIGLRRKPSSVGVTIEVPLSRSSGREVDSSPTSFRSSVSHLMSTSFKRILSPERKASLSSPSSDAAPRPS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2663 267 CDD RING-H2_EL5-like 102 145 - -
Dere03g2663 267 MobiDBLite consensus disorder prediction 252 267 - -
Dere03g2663 267 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Dere03g2663 267 MobiDBLite consensus disorder prediction 220 243 - -
Dere03g2663 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 160 - -
Dere03g2663 267 Pfam Ring finger domain 102 145 IPR001841 -
Dere03g2663 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Dere03g2663 267 SMART ring_2 103 144 IPR001841 -
Dere03g2663 267 SUPERFAMILY RING/U-box 81 151 - -
Dere03g2663 267 MobiDBLite consensus disorder prediction 218 267 - -
Dere03g2663 267 FunFam RING-H2 finger protein ATL3 69 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2663 Dere-ChrDere03 41739110 41739913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2663 10 264 Rapid Response to Elicitors AT3G16720 47.331 4.17e-58 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2663 03 41739110 41739913 Dere03g2663 03 41739110 41739913 ECH