Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2645 ATGTGTGGGGGTGCTATCATTTCCGACTTCATTGCCGTCAAGCGTGGCCGGAAATTGACCGCCGGTGACCTGTGGTCTGAGCTCGACACTTTCTCCGACCTCCTTGGCTTAGACAGTACCGCCAGTTCTTCCAAACACCAGCCTTCTTCTGGCCACTTTGATCAAAGCCTACCTCAAATACCAATCAACAAAGGAGTGGCAAGCGAGAAGCGGGAGAAGAAAAGCGTGAATACAGAGAAAGGAGGAGGGAAGAGCGGTCAAAGAGCACGCAAGAACGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAGGGTGTCCGAGTGTGGCTCGGCACCTTTAACACCGCCGAAGAAGCAGCCAGAGCCTACGACCAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCCGCGCCTCCAACTCCGGCTCCGGAGAGACCCGCCAAGAAGCGCTGCCTCAGTCCCGAGCTAAGTCAGGCCAGCAACCAGCCCACCGGACCACCGACACCACCACCGCCTTATGAAGCCGATCTGGAGCTGAAGCAGCAAATCTCAAACCTCGAGTCCTTGCTGGGTTTGCAGCCTGAGGAGGAGTCGAGTGAGCAGGCGAGCGGAACTGGAAGCTGCTGCGACGAGTGGCCGGAGTCAGCGGACCTGTGGATGCTGGACGACGTCGTTATGCACTACATGCCCAACCGTCACCTGGTGTTCTAA 753 0.583 MCGGAIISDFIAVKRGRKLTAGDLWSELDTFSDLLGLDSTASSSKHQPSSGHFDQSLPQIPINKGVASEKREKKSVNTEKGGGKSGQRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDQAAKRIRGDKAKLNFPAPPTPAPERPAKKRCLSPELSQASNQPTGPPTPPPPYEADLELKQQISNLESLLGLQPEEESSEQASGTGSCCDEWPESADLWMLDDVVMHYMPNRHLVF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2645 250 MobiDBLite consensus disorder prediction 40 95 - -
Dere03g2645 250 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Dere03g2645 250 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 FunFam Ethylene-responsive transcription factor 2 92 151 - -
Dere03g2645 250 MobiDBLite consensus disorder prediction 40 57 - -
Dere03g2645 250 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 MobiDBLite consensus disorder prediction 143 189 - -
Dere03g2645 250 CDD AP2 94 151 IPR001471 GO:0003700|GO:0006355
Dere03g2645 250 PANTHER DNA-BINDING DOMAIN 52 198 IPR044808 GO:0003700|GO:0009873
Dere03g2645 250 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2645 Dere-ChrDere03 41475826 41477245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2645 1 242 AP2-EREBP Transcription Factor Family AT3G16770 46.520 5.74e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere03g2645 AP2 2.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2645 03 41475826 41477245 Dere03g2645 03 41475826 41477245 ECH