Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g2623 ATGAATCTGGGCAACGCCAAGGGATCCATGTCAACGGCTAGTTCTAGTACAACTTGGAAATCCGGCGGCGACGGCCCCGGCGACCAGTTTCCGGCGGGGCTGCGGGTACTGGTAGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGTGCCGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGTGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTCTAGAGCATATTGGGTTGGAGATGGACCTGCCAGTTATAATGATGTCAGCAGATGATGGAAAAAATGTTGTAATGAAAGGCGTGACACATGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATGAGTGGAAGGATTTGGAGCAATCCTGTAGTGCAGAAGAGGGAGATAGACAGCAAAAGCCATCTGATGAAGCCGATTACTCATCCTCGGCAAATGAAGGAAATTGGAGAAATGCTAAGAAGAAGAGGGACGAGGAGGAAGAAGTAGAGAAGGACGATACATCCACATTAAAGAAGCCGCGTGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTCGGAATTGACAAGGCTGTTCCTAAGAAAATTCTGGAATTGATGAATGTTCCGGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGATTGTATCTTCGTAGGCTCAGTGGAGTTTCTCAGCACCAGGGTAACATGAACAATTCTTTTATCAGTCCACAAGAGGCAACCTTTGGGACAATATCAGCATTTAATGGAATTGATCTTCAAGCTCTTGCTGCTGCTGGCCAGCTTCCAGCACAAAGTCTGGCAACACTTCAAGCAGCGGGACTCGGTAGATCAACTGCTAAAGTTGGTGTATCCGTGCCCCTTGTTGATGAAAGGAATCTTTTCAGTTTTGAAAATCCAAGATTAAGATTTGGAGAAGGGCAACACTTGAGCAGTACTAAACCGACAAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAATCCACACAATCCCTTGGTAGCTTGAATGTGCGAGTCAATGCATCTGCTGCGCAGAGCAACCCCTTATTGACGCCAATGGCTCAATCCCAACCAAGAGGTCAGATACTGAGTGAAAATACTGCTTCTCATGTTCCAAGACTTCCATTAACTATGGGGCAGCCTACTGTACCAAACGGAATATCTAATGGTGCTGTGGCCAGAAATGGGATTGCTTGTAATAACAGAGGAGCTGCCTATAATTTAATTCCACAAACCTCTTCAATATCGAGTTTTCCTGTGAACCAAACTACAGATATGTCTGTCAGTAGTTTCCCACTTGGAAGTACACCGGGCATATCTGGTATCACATCAAAGGGCACATTTCAAGAGGAAGATACTTCAGGAATAAAAGGCTCTGGAGGATTTGTTCCAAGTTATGACATTTTCAATGAACTGCAGGAACAGAAGTCCCATAATTGGGTACAAAATGTTGGCCTCACGTATGATTCCTCTCAGCATGGAAATCCTTTACAAGGCAACATTGATGTGTTGCCATCAGTTGTAATCCATCAGGGCTTTTCTTCTACCCAACAGACTGGACAGAATAGTGACTCTACTTCGATTGGAAATGCCATGTACTCTCTAGGGAAAGGCATGGAGCATGGAAATCTCCAAAATATTAGTCAACACCTCCATCCACATGTTGAAAATTCTGCAAGGGTTAAGACTGAAATAATTCCTGATGCAAACTCCTGTTCTAACTTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCGCTTTTGAAACAGCAAGAAGGCATTGGAGCAGCTGAGAATGAGTTTGACTTGGATGGATATTCCATGGACAACATTCCCGTGTAG 2028 0.4467 MNLGNAKGSMSTASSSTTWKSGGDGPGDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSCSAEEGDRQQKPSDEADYSSSANEGNWRNAKKKRDEEEEVEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNMNNSFISPQEATFGTISAFNGIDLQALAAAGQLPAQSLATLQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRFGEGQHLSSTKPTNLLHGIPTNMEPKQLANLHQSTQSLGSLNVRVNASAAQSNPLLTPMAQSQPRGQILSENTASHVPRLPLTMGQPTVPNGISNGAVARNGIACNNRGAAYNLIPQTSSISSFPVNQTTDMSVSSFPLGSTPGISGITSKGTFQEEDTSGIKGSGGFVPSYDIFNELQEQKSHNWVQNVGLTYDSSQHGNPLQGNIDVLPSVVIHQGFSSTQQTGQNSDSTSIGNAMYSLGKGMEHGNLQNISQHLHPHVENSARVKTEIIPDANSCSNFFPEHYGQEDLMSALLKQQEGIGAAENEFDLDGYSMDNIPV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g2623 675 SMART REC_2 34 146 IPR001789 GO:0000160
Dere03g2623 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 389 IPR045279 GO:0009736
Dere03g2623 675 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160
Dere03g2623 675 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Dere03g2623 675 SUPERFAMILY CheY-like 33 156 IPR011006 -
Dere03g2623 675 CDD REC_typeB_ARR-like 36 150 - -
Dere03g2623 675 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Dere03g2623 675 PIRSF RR_ARR_type-B 9 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere03g2623 675 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
Dere03g2623 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Dere03g2623 675 MobiDBLite consensus disorder prediction 163 210 - -
Dere03g2623 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Dere03g2623 675 MobiDBLite consensus disorder prediction 190 210 - -
Dere03g2623 675 Gene3D - 210 272 - -
Dere03g2623 675 MobiDBLite consensus disorder prediction 1 23 - -
Dere03g2623 675 Gene3D - 34 171 - -
Dere03g2623 675 MobiDBLite consensus disorder prediction 163 177 - -
Dere03g2623 675 MobiDBLite consensus disorder prediction 1 25 - -
Dere03g2623 675 FunFam Two-component response regulator 34 171 - -
Dere03g2623 675 FunFam Two-component response regulator 209 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g2623 Dere-ChrDere03 41070962 41074150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g2623 68 675 Response Regulator Gene Family AT3G16857 50.304 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere03g2623 Response_reg 9.8e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g2623 03 41070962 41074150 Dere03g2623 03 41070962 41074150 ECH